PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_14634_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bHLH
Protein Properties Length: 246aa    MW: 28281.9 Da    PI: 4.9021
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_14634_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.23.4e-145698754
                                          HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                                   HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                                            Er+RR+++N++++ Lr+++Pk +      K++Ka+i + A+eYI++L
  cra_locus_14634_iso_1_len_1053_ver_3 56 VSERNRRKKLNDRLFALRSVVPKiS------KMDKASIIKDAIEYIQEL 98
                                          57*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.53E-1848115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.2594998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.53E-1352103No hitNo description
Gene3DG3DSA:4.10.280.101.1E-1755116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-1555104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.1E-125698IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MESLDIHEEY KHYWETNMIF QTEELESYFD DQTLSAYYDS SSPDGGQSST ASKNIVSERN  60
RRKKLNDRLF ALRSVVPKIS KMDKASIIKD AIEYIQELHE QERILQAEIS ELELKKNAFM  120
EFDQETISYA NSKPKRTRIH HHDHYSINGG SRSSPIEILE LRVSYMREKT IVVSLTCSKR  180
TDTMVKLCEV FESLDLKVIT ANITAFSGSL ITTVIPEADE EEKDLLKIKI ETAIATLNDP  240
DSPMSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-12571151268Transcription factor MYC2
5gnj_B1e-12571151268Transcription factor MYC2
5gnj_E1e-12571151268Transcription factor MYC2
5gnj_F1e-12571151268Transcription factor MYC2
5gnj_G1e-12571151268Transcription factor MYC2
5gnj_I1e-12571151268Transcription factor MYC2
5gnj_M1e-12571151268Transcription factor MYC2
5gnj_N1e-12571151268Transcription factor MYC2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008223870.11e-118PREDICTED: transcription factor bHLH35
SwissprotQ2HIV98e-82BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A251QTX51e-117A0A251QTX5_PRUPE; Uncharacterized protein
STRINGXP_008223870.11e-118(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29232451