PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_14605_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB | ||||||||
Protein Properties | Length: 418aa MW: 46409.5 Da PI: 8.0507 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.7 | 4.2e-16 | 118 | 163 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l ++v+++G+ +W++Ia+++ gR++k+c++rw++ cra_locus_14605_iso_1_len_1495_ver_3 118 RGHWRPAEDTKLRELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 163 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 56.2 | 7.9e-18 | 170 | 213 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+e+l a++++G++ W+ Iar ++ gRt++ +k++w+ cra_locus_14605_iso_1_len_1495_ver_3 170 RRAFTEEEEERLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 213 678*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.398 | 113 | 164 | IPR017930 | Myb domain |
SMART | SM00717 | 4.6E-14 | 117 | 166 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.7E-16 | 118 | 163 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.49E-28 | 118 | 211 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.2E-26 | 119 | 171 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.53E-13 | 121 | 162 | No hit | No description |
PROSITE profile | PS51294 | 27.288 | 165 | 219 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-14 | 169 | 217 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-14 | 170 | 212 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.7E-21 | 172 | 218 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.35E-11 | 172 | 212 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 418 aa Download sequence Send to blast |
MANECKCSPN KSINISIDSY RPSSSPSPSH LGSMGTIFAD MGSLSINPIS YSPQETSFCN 60 NKSNGFPQNW DILEGKVSSD CSNESIDLNA GLSEEKNTTQ NGGKERSENS GQSKLCARGH 120 WRPAEDTKLR ELVALYGPQN WNLIAEKLEG RSGKSCRLRW FNQLDPRINR RAFTEEEEER 180 LMAAHRLYGN KWAMIARLFP GRTDNAVKNH WHVIMARKYR EQSSAYRRRK MGQLVCRKGE 240 DNDPPPPSFV TGETTAPPPP PPLPSYSFNN SNRAVAALGN LAAGGISCGS FSSPHLISPQ 300 TGFANDQTRC GHYFPGSSCS SNNGVMSIFN MNNMNSSSRD WDRPKRGESN MAYFYHQQIQ 360 QSQYYNQYPH SFSEVSSVTE IAAAESSSSA ELRDDRITNN PCEKIAPPFI DFLGVGAT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-33 | 118 | 218 | 7 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00222 | DAP | Transfer from AT1G69560 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027096338.1 | 1e-123 | myb-like protein AA | ||||
TrEMBL | A0A068TWL5 | 1e-117 | A0A068TWL5_COFCA; Uncharacterized protein | ||||
STRING | VIT_01s0026g02600.t01 | 1e-110 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1684 | 24 | 70 |