PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_14527_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family B3
Protein Properties Length: 281aa    MW: 32224.8 Da    PI: 6.778
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_14527_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.21.1e-11176253385
                                          EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
                                   B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 
                                          +v+  + v ++  +++p k +++h ++k  s++++l     r+W v++ +r ++   +lt+GWk+F+ +n L+e
  cra_locus_14527_iso_1_len_964_ver_3 176 TVMQAAQVYEKFYMTIPAKWTKDHLNDK--SQEIMLC-VGERKWFVTFAHRVYG--GLLTGGWKKFATDNFLEE 244
                                          677788999999************7674..4467654.478*******777776..47**************** PP

                                          T-EEEEEE- CS
                                   B3  77 gDfvvFkld 85 
                                           D+++F  +
  cra_locus_14527_iso_1_len_964_ver_3 245 FDVCLFDII 253
                                          ******966 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.615147IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-81252IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-81347IPR015300DNA-binding pseudobarrel domain
CDDcd100171.29E-71445No hitNo description
Gene3DG3DSA:2.40.330.104.1E-17169269IPR015300DNA-binding pseudobarrel domain
CDDcd100174.09E-11173250No hitNo description
SuperFamilySSF1019361.63E-13173269IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.8E-5174271IPR003340B3 DNA binding domain
PROSITE profilePS5086310.814174271IPR003340B3 DNA binding domain
PfamPF023621.7E-9176254IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MEDDDCRTCK KRVWKEFVED HCLQENEILV FKYKGDSSFD VLIFDHKSFC EKEACYFVKK  60
CRHGELGNSS KSKANGIESF EVADGPQEEV ECTPHAKKSF EAANGPLQDH KSPPTINVLR  120
SPVERKIQRK TKNKSIKRSF LHSLELVSHR RPVTEEEKEK ALRMAVAASS EDSLITVMQA  180
AQVYEKFYMT IPAKWTKDHL NDKSQEIMLC VGERKWFVTF AHRVYGGLLT GGWKKFATDN  240
FLEEFDVCLF DIITGTDYAG VVLDVNIFRV VEDVIPPSQV K