PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_14522_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

SRS

Protein Properties

Length: 355aa MW: 38404.8 Da PI: 7.4648

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_14522_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	230.9	2.2e-71	135	284	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkr 76 ++sCqdCGnqakkdCah+RCRtCCksrg++C thvkstWvpaakrrerqqqla+++++++++++++++++++ cra_locus_14522_iso_1_len_1867_ver_3 135 SGISCQDCGNQAKKDCAHMRCRTCCKSRGYNCPTHVKSTWVPAAKRRERQQQLASLQQQQQHQQNQQQQQQHQ 207 5689**************************************************99888777666666555 PP DUF702 77 elkskkqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLyd 149 l+ +++ ++tk +++++++ le+ ++P+evss+a+frcvrvss+d+ge+++aYqtav+igGhvfkGiLyd cra_locus_14522_iso_1_len_1867_ver_3 208 -LQLHHHHHRENTKRHRENPSSGLEVGNFPAEVSSPAIFRCVRVSSIDEGEDQYAYQTAVNIGGHVFKGILYD 279 .457777788888889999999*********************************************** PP DUF702 150 qGlee 154 qG+e+ cra_locus_14522_iso_1_len_1867_ver_3 280 QGPES 284 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.8E-67	136	283	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.1E-27	138	180	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	6.6E-29	235	282	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010051	Biological Process	xylem and phloem pattern formation
GO:0010252	Biological Process	auxin homeostasis
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048479	Biological Process	style development
GO:0048480	Biological Process	stigma development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MAGFFSLGGG GGGAGGGTQS GRATTSNNQE EESQNPNIGI SPENWFLYRN NQDEDNIPYN 60 KGFELWQYHQ QQQQQRHNHP AAVVQDLYPL DIGGGSSSSH HHGRLNLTSD EPNPRSGAAG 120 GFVMMRSSGS GGGGSGISCQ DCGNQAKKDC AHMRCRTCCK SRGYNCPTHV KSTWVPAAKR 180 RERQQQLASL QQQQQHQQNQ QQQQQHQLQL HHHHHRENTK RHRENPSSGL EVGNFPAEVS 240 SPAIFRCVRV SSIDEGEDQY AYQTAVNIGG HVFKGILYDQ GPESQYMATD QSSSGGGSGS 300 TSGVHQLNLI TGSSSGAAAA TTTTVTGPFI DPNSIYPAPL NTFMAGTQFF PPPRS

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MAGFFSLGGG GGGAGGGTQS GRATTSNNQE EESQNPNIGI SPENWFLYRN NQDEDNIPYN  60
KGFELWQYHQ QQQQQRHNHP AAVVQDLYPL DIGGGSSSSH HHGRLNLTSD EPNPRSGAAG  120
GFVMMRSSGS GGGGSGISCQ DCGNQAKKDC AHMRCRTCCK SRGYNCPTHV KSTWVPAAKR  180
RERQQQLASL QQQQQHQQNQ QQQQQHQLQL HHHHHRENTK RHRENPSSGL EVGNFPAEVS  240
SPAIFRCVRV SSIDEGEDQY AYQTAVNIGG HVFKGILYDQ GPESQYMATD QSSSGGGSGS  300
TSGVHQLNLI TGSSSGAAAA TTTTVTGPFI DPNSIYPAPL NTFMAGTQFF PPPRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619, ECO:0000269\|PubMed:20154152, ECO:0000269\|PubMed:22318676}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00613	PBM	Transfer from AT3G51060	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269\|PubMed:21976484}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016560706.1	1e-107	PREDICTED: protein SHI RELATED SEQUENCE 1-like
Swissprot	Q9SD40	6e-84	SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBL	A0A0V0IDY8	1e-107	A0A0V0IDY8_SOLCH; Uncharacterized protein
STRING	XP_009628752.1	1e-106	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]