PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_14457_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

GeBP

Protein Properties

Length: 326aa MW: 36676.5 Da PI: 9.9034

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_14457_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	87.9	1.3e-27	72	166	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaks 74 +f+r+w+e Dei +LqGlid+ +++ s d++ fy +++ +s ++ksql+eK+rrL+kK++ +++ ++ cra_locus_14457_iso_1_len_1126_ver_3 72 KFHRIWTEPDEIRFLQGLIDCGSENL-SFPRDLNVFYARFSNMMSQPYTKSQLSEKLRRLRKKYRVISTRLSK 143 699****************77665.7778************************************** PP DUF573 75 gkepsfskehdqkifelskkiWg 97 g ++sf ++hd+ ++ls+ +W+ cra_locus_14457_iso_1_len_1126_ver_3 144 GLDQSFLSTHDRALYQLSRLLWH 166 ********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	8.9E-29	73	166	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
XGRGNPISAA SKSKLPLKRK ASESNPILKA HLTPAILPVD PNTFPPITSS KTYSDSIGTA 60 ANSGHQRPPP FKFHRIWTEP DEIRFLQGLI DCGSENLSFP RDLNVFYARF SNMMSQPYTK 120 SQLSEKLRRL RKKYRVISTR LSKGLDQSFL STHDRALYQL SRLLWHPDHA EKSPFSGTGS 180 IKTQKSDVVG VKVNFLPPSP ANLEPNLVEN FEFNYRDDGF KSVEFGGEGK LTEVNVEFEK 240 EGIGEGKVLG PIGVENLMGG LAVKAAVDAF DESLNEVRMV FANFVKEEGN ILSFQKRWQE 300 QRFAEMEALG RRMRLLFEHS LLQKQG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027073921.1	1e-103	probable transcription factor At5g28040
Refseq	XP_027077713.1	1e-103	probable transcription factor At5g28040
Refseq	XP_027177670.1	1e-103	probable transcription factor At5g28040
TrEMBL	A0A068U0C2	1e-96	A0A068U0C2_COFCA; Uncharacterized protein
STRING	PGSC0003DMT400096875	1e-87	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12822	19	21