PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_14431_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GRF
Protein Properties Length: 352aa    MW: 37677.5 Da    PI: 9.5225
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_14431_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.18.4e-25234278145
                                   WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                                           d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  cra_locus_14431_iso_1_len_1324_ver_3 234 DPEPGRCRRTDGKKWRCSRDAIADHKYCERHMNRGRHRSRKPVEG 278
                                           79****************************************986 PP
2QLQ62.31.3e-21166202137
                                   QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                                           ++FT++Q+++L++Q+l+yKy++an+P+P++Ll +i+k
  cra_locus_14431_iso_1_len_1324_ver_3 166 GPFTPSQWMELEHQALIYKYINANVPIPSYLLTPIRK 202
                                           59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.2E-12166202IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.7E-15167201IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.94167202IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.563234278IPR014977WRC domain
PfamPF088797.3E-21235277IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MDFGGVVGLD NGGLMCSETS AFATSSAISS DVTTAETKQK WYGSASFLKQ ERSGTNNTNT  60
IEDDWRSLKI AKTISDDFSS ASAAGSKSMP TSPLLRSTTN NSSSFLSDGH QQQMLSFSSP  120
NNNSHTFTLP YYHHPSSIAY ARNAIAGYGS SGGGLTMQGV LSGARGPFTP SQWMELEHQA  180
LIYKYINANV PIPSYLLTPI RKALDSAGLS AFTGLRPNSF GWGAFHLGFS NSNDPEPGRC  240
RRTDGKKWRC SRDAIADHKY CERHMNRGRH RSRKPVEGQS GHSVSGTTNN KLMPTTMPSS  300
SSSASASATV VPAGGSSSNN SLALSSHHHQ LNNNLQPSST ATQCSQPLHG DR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027149347.11e-138growth-regulating factor 1-like
TrEMBLA0A068TXM51e-135A0A068TXM5_COFCA; Uncharacterized protein
STRINGVIT_18s0001g08650.t011e-118(Vitis vinifera)