PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_14421_iso_5

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C2H2

Protein Properties

Length: 165aa MW: 18104.2 Da PI: 7.602

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_14421_iso_5	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14	0.00015	96	118	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H cra_locus_14421_iso_5_len_703_ver_3 96 FSCNYCRRKFYSSQALGGHQNAH 118 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.43E-6	94	123	No hit	No description
PROSITE profile	PS50157	11.385	96	123	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	98	118	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MKPLNTNLES EEDSEVSSQV ASNVSTQEIS PGPSKDSTTS SPCLTESIDL ERDLRPITLD 60 LTLGFNKNEG VQLQGMSEPS GEVIPHPPAS AVSRVFSCNY CRRKFYSSQA LGGHQNAHKR 120 ERTLAKRAMR MNMLSDRYAS LASLPLHGSA YRSLGVEAHA SMHQR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027099753.1	1e-83	zinc finger protein 4-like
Refseq	XP_027099754.1	1e-83	zinc finger protein 4-like
Refseq	XP_027099755.1	1e-83	zinc finger protein 4-like
TrEMBL	A0A068UAD4	4e-82	A0A068UAD4_COFCA; Uncharacterized protein
STRING	Solyc01g005130.2.1	2e-75	(Solanum lycopersicum)