PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_14399_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GRAS
Protein Properties Length: 549aa    MW: 60915.8 Da    PI: 6.5095
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_14399_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS247.26.7e-761375142374
                                  GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetsekn 73 
                                           ++lL  cA a+++++ +++q+lL  ++elas +gd+++Rlaa+ ++AL + l++  +++++al  +++ +++n
  cra_locus_14399_iso_2_len_1883_ver_3 137 EQLLNPCAAAITASNPSRVQHLLYVIHELASLTGDANHRLAAHGLRALTHYLSS--PGTSSALaGATTFASTN 207
                                           689**************************************************9..99999993444445445 PP

                                  GRAS  74 sseelaalklfsevsPilkfshltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRp.egppsl 142
                                            +  + +l  f+++ P++++ + +aN+ Il+ + g+   + +Hi+D+++s+G+QWp+Ll++L+ R+ ++pp +
  cra_locus_14399_iso_2_len_1883_ver_3 208 PKFFTYSLINFNDINPWFRIPNSIANSSILQILTGQdqsRNLHILDIGVSHGIQWPTLLEELSRRSgGPPPLV 280
                                           5555555555***********************999777889************************55666** PP

                                  GRAS 143 RiTgvgspesg.........skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnl 206
                                           RiT++ +  ++          +    +  ++L +fA+++++++++n l    l++l+ + ++ +p+E+l+++ 
  cra_locus_14399_iso_2_len_1883_ver_3 281 RITVITQTIEDeqsrntpflVSPPDYNCSSQLLSFAKAIKINLQINRLDNFPLQNLNSQVINASPDETLIICA 353
                                           *****997666667777777666678899******************8777********************** PP

                                  GRAS 207 vlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh...nsesFlerflealeyysalfdsleaklp 276
                                           +++lh+l    ++ ++er+++Lk+++s++P+ vv++e+++d+   n  +F+++f++ +ey + ++ds ++ + 
  cra_locus_14399_iso_2_len_1883_ver_3 354 QFRLHNLN---HHNPDERTQFLKVLRSMQPTGVVLSENNIDCcciNCVDFATGFSRRVEYLWRFLDSASVAY- 422
                                           *******8...66666788********************665557999********************7774. PP

                                  GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdg 348
                                              + r + Er++++ e+ +++++ g++    +e++e+W er++++GF++  ++e+a++ a++llrk++ +++
  cra_locus_14399_iso_2_len_1883_ver_3 423 ---KGRESDERRMVEGEAAKALTNMGEM----NERKENWCERMTSVGFSKEMFGEDAVDGARALLRKYDsNWE 488
                                           ...4455555555556689999999998....78888********************************9999 PP

                                  GRAS 349 yrveeesgslvlgWkdrpLvsvSaWr 374
                                            rv++++g++ l+W+++p+ ++S W+
  cra_locus_14399_iso_2_len_1883_ver_3 489 IRVDDRDGCVGLCWRGQPVSFCSLWK 514
                                           *************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.497110493IPR005202Transcription factor GRAS
PfamPF035142.3E-73137514IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
XLPSIFDDPY GSNDFNSISW WVQGQTPEQE QINNSSTSFN SNSTSTSTVV AEPIIPDSQI  60
PSDSSKKRKA SDGLTPKTSQ ISRRGQNRRI TETDEGDPMV EQGMPARKTT GRQKGATKSS  120
AGNTSINGNN KDGRWAEQLL NPCAAAITAS NPSRVQHLLY VIHELASLTG DANHRLAAHG  180
LRALTHYLSS PGTSSALAGA TTFASTNPKF FTYSLINFND INPWFRIPNS IANSSILQIL  240
TGQDQSRNLH ILDIGVSHGI QWPTLLEELS RRSGGPPPLV RITVITQTIE DEQSRNTPFL  300
VSPPDYNCSS QLLSFAKAIK INLQINRLDN FPLQNLNSQV INASPDETLI ICAQFRLHNL  360
NHHNPDERTQ FLKVLRSMQP TGVVLSENNI DCCCINCVDF ATGFSRRVEY LWRFLDSASV  420
AYKGRESDER RMVEGEAAKA LTNMGEMNER KENWCERMTS VGFSKEMFGE DAVDGARALL  480
RKYDSNWEIR VDDRDGCVGL CWRGQPVSFC SLWKIDPXMQ MTVAAKERSS SSVPVITDLT  540
LFELCSPPV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B2e-3313251483473Protein SHORT-ROOT
5b3h_B1e-3313251429419Protein SHORT-ROOT
5b3h_E1e-3313251429419Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027125741.10.0nodulation-signaling pathway 1 protein-like
SwissprotQ4VYC80.0NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBLA0A068TP920.0A0A068TP92_COFCA; Uncharacterized protein
STRINGXP_009594760.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49492139
Publications ? help Back to Top
  1. Cerri MR, et al.
    Medicago truncatula ERN transcription factors: regulatory interplay with NSP1/NSP2 GRAS factors and expression dynamics throughout rhizobial infection.
    Plant Physiol., 2012. 160(4): p. 2155-72
    [PMID:23077241]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]