PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_14386_iso_4
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 265aa    MW: 27545 Da    PI: 8.3605
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_14386_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH291.8e-097095227
                                          -S---SGGGGTS--TTTTT-SS-SSS CS
                               zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                                          kt++C++f     Ck+Gd+C+FaHg+
  cra_locus_14386_iso_4_len_1072_ver_3 70 KTKICSRFNTAEGCKFGDKCHFAHGE 95
                                          89**********************96 PP
2zf-CCCH37.63.8e-12232256126
                                           --S---SGGGGTS--TTTTT-SS-SS CS
                               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                           ykt+lC +fa+ G C +G+rC+FaHg
  cra_locus_14386_iso_4_len_1072_ver_3 232 YKTKLCENFAK-GSCTFGERCHFAHG 256
                                           9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035618831IPR000571Zinc finger, CCCH-type
PfamPF146080.931829No hitNo description
PROSITE profilePS501036.5781932IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-136698IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-86798IPR000571Zinc finger, CCCH-type
SMARTSM003566.9E-46895IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.7426896IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-67095IPR000571Zinc finger, CCCH-type
SuperFamilySSF547914.24E-15131207IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.102.1E-16135206IPR004088K Homology domain, type 1
SMARTSM003223.0E-12136206IPR004087K Homology domain
PROSITE profilePS5008414.278137201IPR004088K Homology domain, type 1
PfamPF000131.3E-11139203IPR004088K Homology domain, type 1
CDDcd001054.78E-14139201No hitNo description
Gene3DG3DSA:4.10.1000.109.8E-17226262IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-9229261IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-7231257IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.746231258IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-9232256IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MSGIDAIGYX CFICSTAGCQ FGESCHFLHY VPGGYNAVAQ MMNLTPAPAS RNAVATPSIP  60
NGASGSPAVK TKICSRFNTA EGCKFGDKCH FAHGEWEIGK PIIPWHEDPR AMGPGPGRFG  120
GRMEPAVPGP AAGFGASATT KISVDASLAG GIIGKSGVNS KQICRQTGAK LAIRDHESDP  180
NLRNIELEGT FEQIQQASAM VRELIASLGS SVVGLGRASG GPGGPPPQMS NYKTKLCENF  240
AKGSCTFGER CHFAHGAAEL RKSGV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019245694.11e-146PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R05e-94C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A1J6IEQ91e-145A0A1J6IEQ9_NICAT; Zinc finger ccch domain-containing protein 14
STRINGXP_009780696.11e-144(Nicotiana sylvestris)