PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_14377_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

MYB_related

Protein Properties

Length: 300aa MW: 34023.5 Da PI: 4.7581

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_14377_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.5	1.3e-17	58	103	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE+ ++v+++ +lG++ W++I+++++ gRt++++k++w+++l cra_locus_14377_iso_1_len_1412_ver_3 58 RGPFSPEEENIIVRLHSMLGNK-WAAISSHLP-GRTDNEIKNFWNSHL 103 89******************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.4	9	52	IPR017877	Myb-like domain
SuperFamily	SSF46689	2.7E-21	11	99	IPR009057	Homeodomain-like
SMART	SM00717	9.7	13	54	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.2E-11	15	59	IPR009057	Homeodomain-like
PROSITE profile	PS51294	26.483	53	107	IPR017930	Myb domain
SMART	SM00717	2.9E-17	57	105	IPR001005	SANT/Myb domain
Pfam	PF00249	1.4E-16	58	103	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.8E-27	60	106	IPR009057	Homeodomain-like
CDD	cd00167	1.22E-11	60	103	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MGRSPCCDKG GVKKGAWTPE EDKILVDYIN KXWAWYLAIS SKTCGLRWTN YLRPDIKRGP 60 FSPEEENIIV RLHSMLGNKW AAISSHLPGR TDNEIKNFWN SHLKKRATAS MDQSSYQPSF 120 FSESSDDANL ESQSTQHMVQ WERATLEAEI QLSKDPLLLN SQSAVKTEND YFLRLWNSEV 180 GESFRKVNDY EVACQSPVSQ VSSSTRDESS SGVTIHTNDP PRVLLSPART TNTQKHAENV 240 SVKKDPEDHL ILGSESSKSY ELDESSDATM KLLLDFPQGD EMEYLQEPVE DVSIYLQDPF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	9e-20	14	107	7	108	B-MYB
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027103808.1	1e-127	transcription factor MYB41-like
Refseq	XP_027103809.1	1e-127	transcription factor MYB41-like
TrEMBL	A0A068UAM3	1e-123	A0A068UAM3_COFCA; Uncharacterized protein
STRING	VIT_16s0050g00070.t01	1e-93	(Vitis vinifera)
STRING	XP_010273102.1	2e-93	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154