PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_14361_iso_3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HD-ZIP
Protein Properties Length: 805aa    MW: 89381.5 Da    PI: 5.0315
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_14361_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.21.9e-2084139156
                                           TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                              Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                           +++ +++t+ q++e+e+lF+++++p+ ++r +L++ lgL+ rqVk+WFqNrR+++k
  cra_locus_14361_iso_3_len_3098_ver_3  84 KKRYHRHTARQIQEMEALFKECPHPDDKQRMKLSQDLGLKPRQVKFWFQNRRTQMK 139
                                           688899***********************************************998 PP

2START157.31.2e-492865142206
                                           HHHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHH CS
                                 START   2 laeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv.......dsgealrasgvvdmvlall 61 
                                           la +  ++l+k+ + +ep+W + s      e +n +e+l+ f+  +         ++ea+r s+vv+m++ +l
  cra_locus_14361_iso_3_len_3098_ver_3 286 LAISSVEVLLKMCQMAEPLWIRTSneisgkEVLNVEEYLRMFPWPGEikqnsteIRTEASRHSAVVIMNSITL 358
                                           66778899****************88888888888999998865444788899999***************** PP

                                           HHHHCCCGGCT-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS- CS
                                 START  62 veellddkeqWdetla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagd 122
                                           v  +ld + +W e ++    +a+t++v++sg      g l+lm+ae+q+lsplvp R++ f+Ry+ q  ++g+
  cra_locus_14361_iso_3_len_3098_ver_3 359 VDAFLDAA-KWMELFPsivsRAKTIQVVNSGvsghanGSLHLMYAETQMLSPLVPtRESHFLRYCHQnVEEGS 430
                                           ********.**********************************************************99**** PP

                                           EEEEEEEEE-..TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHH CS
                                 START 123 wvivdvSvds..eqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaega 193
                                           wvivd  +ds  e++pp + ++ +  + pSg++i++++ng+s+vtwvehv+++ +++h+++++ v+sgla+ga
  cra_locus_14361_iso_3_len_3098_ver_3 431 WVIVDFPLDSfnESYPPPTFPYYK--RKPSGCIIQDMPNGYSRVTWVEHVEVEQSHVHQIFNQYVGSGLAFGA 501
                                           *****9888532555555777777..9********************************************** PP

                                           HHHHHHTXXXXXX CS
                                 START 194 ktwvatlqrqcek 206
                                           ++w+a lqrqce+
  cra_locus_14361_iso_3_len_3098_ver_3 502 QRWLAVLQRQCER 514
                                           ***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.13E-1974142IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.4E-2278147IPR009057Homeodomain-like
PROSITE profilePS5007117.03881141IPR001356Homeobox domain
SMARTSM003892.0E-1882145IPR001356Homeobox domain
PfamPF000466.3E-1884139IPR001356Homeobox domain
CDDcd000864.97E-1884142No hitNo description
PROSITE patternPS000270116139IPR017970Homeobox, conserved site
PROSITE profilePS5084840.138276517IPR002913START domain
SuperFamilySSF559619.34E-31277516No hitNo description
CDDcd088753.17E-114280513No hitNo description
SMARTSM002341.7E-36285514IPR002913START domain
PfamPF018522.9E-42286514IPR002913START domain
SuperFamilySSF559617.28E-17559764No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 805 aa     Download sequence    Send to blast
MGGNGENSFY PPSIQNPNFN NFMTNLPFSI FPPLIPKEEM NGASKNKEEL MVESGSGSEQ  60
VEGISGNEEQ EADQSAQQQP PNKKKRYHRH TARQIQEMEA LFKECPHPDD KQRMKLSQDL  120
GLKPRQVKFW FQNRRTQMKA QQDRQDNVIL RAENENLKTE NYRLQTALRN IMCPNCGGPA  180
MLGEMGYDEQ QLRLENARLK EEFERVCCLI SQYTGRPIQS IVPNSLMAPN SLDLDMSIFP  240
RKFEEPLGNC SDHLINPSVG NFMPETSNFG GGVLILDEEK SLAMELAISS VEVLLKMCQM  300
AEPLWIRTSN EISGKEVLNV EEYLRMFPWP GEIKQNSTEI RTEASRHSAV VIMNSITLVD  360
AFLDAAKWME LFPSIVSRAK TIQVVNSGVS GHANGSLHLM YAETQMLSPL VPTRESHFLR  420
YCHQNVEEGS WVIVDFPLDS FNESYPPPTF PYYKRKPSGC IIQDMPNGYS RVTWVEHVEV  480
EQSHVHQIFN QYVGSGLAFG AQRWLAVLQR QCERIASLMA RNISDLGVIP SPEARKNLMN  540
LSQRMIRTFS LNISTSCGQS WTALSDSAED TVRITPRKVV EPGEPNGLVL SAVSTAWLPY  600
SHYQVFEFLR DESRRAQLDV LSNGNSLQEV AHIANGSHPG NCISLLRINV ASNSSQRVEL  660
MLQESCIDDS GSLVVYAIVD VEAIQLAMSG EDPSCIPLLP LGFVIQPMPP PSPGQESSTE  720
VIKEPGCLLT VGLQVLASTI PTAKLNLSSV TAINHNLCNT IQQITAALGN GMVNNLSTPG  780
AASSAEPVPS ASAPPMQADQ ESVSL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027085532.10.0homeobox-leucine zipper protein HDG5-like isoform X3
SwissprotQ9FJS20.0HDG5_ARATH; Homeobox-leucine zipper protein HDG5
TrEMBLA0A068VCG20.0A0A068VCG2_COFCA; Uncharacterized protein
STRINGXP_009786380.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90202226
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]