PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_14361_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 805aa MW: 89381.5 Da PI: 5.0315 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.2 | 1.9e-20 | 84 | 139 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++e+e+lF+++++p+ ++r +L++ lgL+ rqVk+WFqNrR+++k cra_locus_14361_iso_3_len_3098_ver_3 84 KKRYHRHTARQIQEMEALFKECPHPDDKQRMKLSQDLGLKPRQVKFWFQNRRTQMK 139 688899***********************************************998 PP | |||||||
2 | START | 157.3 | 1.2e-49 | 286 | 514 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHH CS START 2 laeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv.......dsgealrasgvvdmvlall 61 la + ++l+k+ + +ep+W + s e +n +e+l+ f+ + ++ea+r s+vv+m++ +l cra_locus_14361_iso_3_len_3098_ver_3 286 LAISSVEVLLKMCQMAEPLWIRTSneisgkEVLNVEEYLRMFPWPGEikqnsteIRTEASRHSAVVIMNSITL 358 66778899****************88888888888999998865444788899999***************** PP HHHHCCCGGCT-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS- CS START 62 veellddkeqWdetla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagd 122 v +ld + +W e ++ +a+t++v++sg g l+lm+ae+q+lsplvp R++ f+Ry+ q ++g+ cra_locus_14361_iso_3_len_3098_ver_3 359 VDAFLDAA-KWMELFPsivsRAKTIQVVNSGvsghanGSLHLMYAETQMLSPLVPtRESHFLRYCHQnVEEGS 430 ********.**********************************************************99**** PP EEEEEEEEE-..TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHH CS START 123 wvivdvSvds..eqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaega 193 wvivd +ds e++pp + ++ + + pSg++i++++ng+s+vtwvehv+++ +++h+++++ v+sgla+ga cra_locus_14361_iso_3_len_3098_ver_3 431 WVIVDFPLDSfnESYPPPTFPYYK--RKPSGCIIQDMPNGYSRVTWVEHVEVEQSHVHQIFNQYVGSGLAFGA 501 *****9888532555555777777..9********************************************** PP HHHHHHTXXXXXX CS START 194 ktwvatlqrqcek 206 ++w+a lqrqce+ cra_locus_14361_iso_3_len_3098_ver_3 502 QRWLAVLQRQCER 514 ***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.13E-19 | 74 | 142 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.4E-22 | 78 | 147 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.038 | 81 | 141 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.0E-18 | 82 | 145 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 6.3E-18 | 84 | 139 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.97E-18 | 84 | 142 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 116 | 139 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 40.138 | 276 | 517 | IPR002913 | START domain |
SuperFamily | SSF55961 | 9.34E-31 | 277 | 516 | No hit | No description |
CDD | cd08875 | 3.17E-114 | 280 | 513 | No hit | No description |
SMART | SM00234 | 1.7E-36 | 285 | 514 | IPR002913 | START domain |
Pfam | PF01852 | 2.9E-42 | 286 | 514 | IPR002913 | START domain |
SuperFamily | SSF55961 | 7.28E-17 | 559 | 764 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 805 aa Download sequence Send to blast |
MGGNGENSFY PPSIQNPNFN NFMTNLPFSI FPPLIPKEEM NGASKNKEEL MVESGSGSEQ 60 VEGISGNEEQ EADQSAQQQP PNKKKRYHRH TARQIQEMEA LFKECPHPDD KQRMKLSQDL 120 GLKPRQVKFW FQNRRTQMKA QQDRQDNVIL RAENENLKTE NYRLQTALRN IMCPNCGGPA 180 MLGEMGYDEQ QLRLENARLK EEFERVCCLI SQYTGRPIQS IVPNSLMAPN SLDLDMSIFP 240 RKFEEPLGNC SDHLINPSVG NFMPETSNFG GGVLILDEEK SLAMELAISS VEVLLKMCQM 300 AEPLWIRTSN EISGKEVLNV EEYLRMFPWP GEIKQNSTEI RTEASRHSAV VIMNSITLVD 360 AFLDAAKWME LFPSIVSRAK TIQVVNSGVS GHANGSLHLM YAETQMLSPL VPTRESHFLR 420 YCHQNVEEGS WVIVDFPLDS FNESYPPPTF PYYKRKPSGC IIQDMPNGYS RVTWVEHVEV 480 EQSHVHQIFN QYVGSGLAFG AQRWLAVLQR QCERIASLMA RNISDLGVIP SPEARKNLMN 540 LSQRMIRTFS LNISTSCGQS WTALSDSAED TVRITPRKVV EPGEPNGLVL SAVSTAWLPY 600 SHYQVFEFLR DESRRAQLDV LSNGNSLQEV AHIANGSHPG NCISLLRINV ASNSSQRVEL 660 MLQESCIDDS GSLVVYAIVD VEAIQLAMSG EDPSCIPLLP LGFVIQPMPP PSPGQESSTE 720 VIKEPGCLLT VGLQVLASTI PTAKLNLSSV TAINHNLCNT IQQITAALGN GMVNNLSTPG 780 AASSAEPVPS ASAPPMQADQ ESVSL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027085532.1 | 0.0 | homeobox-leucine zipper protein HDG5-like isoform X3 | ||||
Swissprot | Q9FJS2 | 0.0 | HDG5_ARATH; Homeobox-leucine zipper protein HDG5 | ||||
TrEMBL | A0A068VCG2 | 0.0 | A0A068VCG2_COFCA; Uncharacterized protein | ||||
STRING | XP_009786380.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9020 | 22 | 26 |
Publications ? help Back to Top | |||
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