PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_14220_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ARF
Protein Properties Length: 794aa    MW: 87566 Da    PI: 6.4203
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_14220_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.51.4e-24128229199
                                           EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHH CS
                                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWk 66 
                                           f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++g++W++++i+r++++r++lt+GW+
  cra_locus_14220_iso_3_len_2470_ver_3 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELIAKDLHGNEWKFRHIFRGQPKRHLLTTGWS 198
                                           99*****************************8544444..48******************************* PP

                                           HHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                                    B3  67 eFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                                            Fv+a++L +gD v+F   ++++ +l+++++r+
  cra_locus_14220_iso_3_len_2470_ver_3 199 VFVSAKRLVAGDAVIFI--WNENNQLLLGIRRA 229
                                           *****************..7888889****997 PP
2Auxin_resp121.56.4e-40254337183
                            Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpv 72 
                                           aahaa+t+s F+++YnPras+seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpv
  cra_locus_14220_iso_3_len_2470_ver_3 254 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYAKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPV 326
                                           79*********************************9789********************************** PP

                            Auxin_resp  73 rWpnSkWrsLk 83 
                                           rWpnS+Wrs+k
  cra_locus_14220_iso_3_len_2470_ver_3 327 RWPNSHWRSVK 337
                                           ********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.94E-49114257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-44119243IPR015300DNA-binding pseudobarrel domain
CDDcd100171.01E-22127228No hitNo description
SMARTSM010193.2E-25128230IPR003340B3 DNA binding domain
PROSITE profilePS5086313.267128230IPR003340B3 DNA binding domain
PfamPF023629.2E-23128229IPR003340B3 DNA binding domain
PfamPF065078.9E-35254337IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 794 aa     Download sequence    Send to blast
MRLSTTGFTP QPEEGEKKCL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE  60
VDAQIPNYPG LPAQLICQLH NVTMNADVET DEVYAQMTLQ PLSPQEQKDV CLLPAELGSA  120
SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDYS QQPPAQELIA KDLHGNEWKF  180
RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD AVIFIWNENN QLLLGIRRAS RPQTVMPSSV  240
LSSDSMHIGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LAKYAKAVYH TRVSVGMRFR  300
MLFETEESSV RRYMGTITGI SDLDPVRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL  360
TTFPMYPSPF SLRLKRPWPS GLPSFPGLNS GDVALNSQLS WLHGDIGDQG IQSLNFQGFS  420
ASPWMQPRLD ASMLGLQPDI YQAMAASALQ DTRSLDPSKV ANQSLLQFQH NVSSGSTSLL  480
QSQMLQQPHS EQNFIQSFPD NQVIAQAQIL QQQLQRRLSN GDQQQQLRQQ VQQPQQLHSQ  540
FQQQQLTKPI SNLSQIESST QSQFPPLQGL ASSCPLQQTF SDINHFTASS NSPMPSLLNS  600
FSRDGASQLL NLHGMNSLVS TSPSSKRVAL DSQISSRAAA QSAVSQNDNV ATPNSKIADL  660
STFFPPVTGR EFSQFQSIND TQNSALFGLN TDSSIMLQNG MPHLMNGGSE NESLSMPFAT  720
STYTSGGTDF PLNSDMTTSS CVDESGFLQS SENVDQGNPP TRTFVKVRFL TLESVPFYLI  780
SFSCFVTLDM LEEX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1641635847388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027065054.10.0auxin response factor 6-like
RefseqXP_027065055.10.0auxin response factor 6-like
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A068V5M40.0A0A068V5M4_COFCA; Auxin response factor
STRINGXP_009757615.10.0(Nicotiana sylvestris)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]