PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_1415_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | FAR1 | ||||||||
Protein Properties | Length: 204aa MW: 23344.5 Da PI: 9.9991 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 65.3 | 1.6e-20 | 48 | 131 | 2 | 89 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgk 75 fY+eYA ++GF +r+ +s+ks+r+g+i++r + C ++++ + +++r + gC+a+l +k+ek g+ cra_locus_1415_iso_3_len_1305_ver_3 48 FYDEYAGRTGFITRVLSSRKSERDGSIISRGLGCRGISDSQKSGN----GSQKRDRRKEGCTAMLLIKREKPGR 117 9*********************************86666555554....588999999**************** PP FAR1 76 wevtkleleHnHel 89 w v k+ +HnH+l cra_locus_1415_iso_3_len_1305_ver_3 118 WIVRKFLRDHNHSL 131 ************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.3E-18 | 48 | 132 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MNVDMTADDG SRKTEASVCG EMGLCVTDNS REPYEGMVFD SEEAARAFYD EYAGRTGFIT 60 RVLSSRKSER DGSIISRGLG CRGISDSQKS GNGSQKRDRR KEGCTAMLLI KREKPGRWIV 120 RKFLRDHNHS LLVSLPKRRP TFDEKDKRIQ ELTAELRIKK RLSAAYHEQL LTIMKDVESH 180 NEHLSTKLQT VRDNLKKLDT TRHI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027121642.1 | 1e-106 | protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
Swissprot | Q9SZL8 | 5e-17 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A068UVU4 | 1e-105 | A0A068UVU4_COFCA; Uncharacterized protein | ||||
STRING | XP_009605654.1 | 1e-105 | (Nicotiana tomentosiformis) |
Publications ? help Back to Top | |||
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