PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_14002_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB
Protein Properties Length: 250aa    MW: 28178.9 Da    PI: 8.0875
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_14002_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.48e-193077148
                                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                          rg+WT+eEd ll+++++ +G g+W++ a++ g++Rt+k+c++rw++yl
  cra_locus_14002_iso_2_len_1066_ver_3 30 RGPWTAEEDTLLIHYIASHGEGRWNLLAKRSGLKRTGKSCRLRWLNYL 77
                                          89********************************************97 PP
2Myb_DNA-binding51.32.7e-1683126146
                                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                           rg+ T++E++ ++d++ ++G++ W++Ia++++ gRt++++k++w++
  cra_locus_14002_iso_2_len_1066_ver_3  83 RGNLTPQEQLVILDLHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 126
                                           7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.2332577IPR017930Myb domain
SuperFamilySSF466896.79E-3128124IPR009057Homeodomain-like
SMARTSM007171.1E-162979IPR001005SANT/Myb domain
PfamPF002492.1E-173077IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-233184IPR009057Homeodomain-like
CDDcd001671.19E-123277No hitNo description
PROSITE profilePS5129424.65178132IPR017930Myb domain
SMARTSM007175.0E-1482130IPR001005SANT/Myb domain
PfamPF002491.2E-1483126IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2385131IPR009057Homeodomain-like
CDDcd001671.55E-1087126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
XSSSSSSLSK TTSSSSSSDD DGTGAGGLRR GPWTAEEDTL LIHYIASHGE GRWNLLAKRS  60
GLKRTGKSCR LRWLNYLKPD VKRGNLTPQE QLVILDLHSK WGNRWSKIAQ HLPGRTDNEI  120
KNYWRTRVQK QARHLKIDSN STQFQELIRC VWMPRLIQKI QLDQSSSWDS SLINSASPDH  180
QVLCNSSSAA AVAAQQEELG ARILDQNVDF FQSQGEINYN VDNNSSYDMD AFSLQGPFDI  240
YNGSLDQNNW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26241321108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00159DAPTransfer from AT1G25340Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028070638.17e-98transcription factor MYB24-like
SwissprotQ10MB43e-77MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A2U9IY790.0A0A2U9IY79_CATRO; MYB domain containing protein 116
STRINGXP_008240255.13e-88(Prunus mume)
STRINGXP_002534590.14e-89(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]