PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_13912_iso_5

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

HB-other

Protein Properties

Length: 1818aa MW: 203901 Da PI: 5.1933

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_13912_iso_5	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54	2.8e-17	59	113	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t+ qle+Le+ ++ + yps+e r+eL+ klgL++rq ++WF+ rR k++k cra_locus_13912_iso_5_len_6423_ver_3 59 KRKMKTAFQLETLEKTYAVETYPSEELRAELSVKLGLSDRQLQMWFCHRRLKDRK 113 89999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-16	43	113	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.8E-15	44	113	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.212	54	114	IPR001356	Homeobox domain
SMART	SM00389	1.2E-15	56	118	IPR001356	Homeobox domain
CDD	cd00086	1.93E-12	57	114	No hit	No description
Pfam	PF00046	5.5E-15	59	113	IPR001356	Homeobox domain
SMART	SM00571	6.3E-21	588	647	IPR018501	DDT domain
PROSITE profile	PS50827	17.803	588	647	IPR018501	DDT domain
Pfam	PF02791	7.1E-19	590	644	IPR018501	DDT domain
Pfam	PF05066	3.7E-15	770	838	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	7.4E-8	997	1038	IPR028942	WHIM1 domain
Pfam	PF15613	1.2E-11	1168	1240	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1818 aa Download sequence Send to blast
MEIDGGGSGG SGGAASGADV SASEAAAAAG RGAGGGAGGG PGGSEVEGKS TAEGEPKVKR 60 KMKTAFQLET LEKTYAVETY PSEELRAELS VKLGLSDRQL QMWFCHRRLK DRKPPSEKRQ 120 KKEVSPAMVA GLSSGVGEQM VVADAGNEPG RVSGPSTLGH AETHQQHRVA RRAGTALARI 180 GTEQPSAKRY YEPPQAISEL RAIAFVESQL GERLREDGPI LGMEFDPLPP GAFGAPIVPS 240 GQHKPGLRLY EAPVYERPDA KLVKGATRLV HEYQFLPEQP SIRDDIRERA APSHFYSSSS 300 DAPSSRTPLS SGRSFLLGGE QLTPGHSFQG QMPGLGLLPQ LGKQSHQSSP ASGEVEIVPR 360 RSSFASIGVD AHNAHPIIGA ENPFITPDRR VTHDVERLQR KRKSEEARIA REVEAHEKRI 420 RKELEKQDLL RRKREEQMRK EIERQDKERR KEEERLLREK QREEERQQRE QRREMERREK 480 FLQKESLRAE KMRAKEEMRR EKEAARLKAA NERAAARRIA KESLELIDDE RLELMELAAS 540 SHGFPSILAL DNEALQNLEL HRDKLTEFPP KSVHLKRPFG IQPWTESESS VGNLLMVWKF 600 LMTFADVLGL WPFTLDEFVQ ALHDFDSRLL GEIHIALLRT IIKDIEDVAR TPASALGANQ 660 NSGANPGGGH PQIVEGAYTW GFDIRNWQQH LNPLTWSEVL RQFALSAGLG PKLKKKNVEQ 720 ASLADENEGN GSANIISDLR NGVAAENALA KMRRRGMSNL RRSRHRLTPG TVKYAAFHVL 780 SLEGSHGLSI LEVAEKIQKS GLRDLTTSKT PEASIAAALS RDTKLFERTA PSTYCVRSPY 840 RKDPLDTDSI LSAARERIQV FRNGCLDAEE AEEAEKEDVE RDEDSESDVA EDPDIDDLDN 900 DLKPNKEALV SLEARQYDGE TCSGNGKENS HSELMEIQQS GSGNTERGLH ISKPKTCGEQ 960 KNAGTSVDCS TDAFGVHTDT INTHQEDNVL DESTYGELWV QGLTEGDYSN LSVEERLDAL 1020 VALIGVANEG NSVRIILEER LEAATALKKQ MWSEAQLDKR RIKEEYAIKM LPSSVSVNRA 1080 ELNFSGNVSY GTRSPFVATD GINEVVPANP QNQQEDMGNT GAERNMQLQD LSGHESLLLQ 1140 QTVYAAEKSR SEIKAYIGHK AEEIYVFKSL PLGHDRRRNR YWQFVTSPSQ NDPGCGRIFI 1200 ELHDGRWRVI DSVQDFDALL ESLDVRGIRE FHLQAMLRRI ELSFKEFSSK KLSNSGSQDG 1260 ENEKREVLDS PRRKGLVSNT PIREPLVSCV NLVCDGKDKH DTLKRYQDFE KWTWEECFNS 1320 AVLCAHKYGK ERRKQLLGVC DSCKDLFFFE DYHCTFCHKN YFISLMDFDV ANHITQCKEK 1380 REELHDVALQ KLEYLPPLTS RLLKAQLACV EASIPSEALE DFWSEDYRKY WGMKLQTASS 1440 TEDLLQILTI LESAIKSDFL SSNYETATEL LGSRDLTEYA NSFSNLETIK VPPWIPKTMS 1500 AVVLRFMEFD SSISYTMHQF EDSQRDKGSR NIITIPARYT VLRNSMEDRH EEYLHRAGTG 1560 QEDDWDVSVN MRNSSGRGRS RGRGRGGIRD GRSQRSFTGS RNESVADLTA TKNDKFGPLS 1620 GWKGRQRGRG GRKRGRRTVR SKKKPAKKAT RXXXXXXXXX XXXXXXXXAS SHQLEWDDNG 1680 AVQVELEEEN VSSSERSGFD DDNGQASGDE YDDHIVDHHY SGGFSSQSQH EMAGLDYGVG 1740 VDNVNYVDEE EEEEEEEXSG GDGDDSEDEG QVEVEEDVEE YIDGDSEEEE GNNKFTGEEE 1800 QMQNLDKDLE FSSSDYSD

Sequence ? help Back to Top

Protein Sequence Length: 1818 aa Download sequence Send to blast

MEIDGGGSGG SGGAASGADV SASEAAAAAG RGAGGGAGGG PGGSEVEGKS TAEGEPKVKR  60
KMKTAFQLET LEKTYAVETY PSEELRAELS VKLGLSDRQL QMWFCHRRLK DRKPPSEKRQ  120
KKEVSPAMVA GLSSGVGEQM VVADAGNEPG RVSGPSTLGH AETHQQHRVA RRAGTALARI  180
GTEQPSAKRY YEPPQAISEL RAIAFVESQL GERLREDGPI LGMEFDPLPP GAFGAPIVPS  240
GQHKPGLRLY EAPVYERPDA KLVKGATRLV HEYQFLPEQP SIRDDIRERA APSHFYSSSS  300
DAPSSRTPLS SGRSFLLGGE QLTPGHSFQG QMPGLGLLPQ LGKQSHQSSP ASGEVEIVPR  360
RSSFASIGVD AHNAHPIIGA ENPFITPDRR VTHDVERLQR KRKSEEARIA REVEAHEKRI  420
RKELEKQDLL RRKREEQMRK EIERQDKERR KEEERLLREK QREEERQQRE QRREMERREK  480
FLQKESLRAE KMRAKEEMRR EKEAARLKAA NERAAARRIA KESLELIDDE RLELMELAAS  540
SHGFPSILAL DNEALQNLEL HRDKLTEFPP KSVHLKRPFG IQPWTESESS VGNLLMVWKF  600
LMTFADVLGL WPFTLDEFVQ ALHDFDSRLL GEIHIALLRT IIKDIEDVAR TPASALGANQ  660
NSGANPGGGH PQIVEGAYTW GFDIRNWQQH LNPLTWSEVL RQFALSAGLG PKLKKKNVEQ  720
ASLADENEGN GSANIISDLR NGVAAENALA KMRRRGMSNL RRSRHRLTPG TVKYAAFHVL  780
SLEGSHGLSI LEVAEKIQKS GLRDLTTSKT PEASIAAALS RDTKLFERTA PSTYCVRSPY  840
RKDPLDTDSI LSAARERIQV FRNGCLDAEE AEEAEKEDVE RDEDSESDVA EDPDIDDLDN  900
DLKPNKEALV SLEARQYDGE TCSGNGKENS HSELMEIQQS GSGNTERGLH ISKPKTCGEQ  960
KNAGTSVDCS TDAFGVHTDT INTHQEDNVL DESTYGELWV QGLTEGDYSN LSVEERLDAL  1020
VALIGVANEG NSVRIILEER LEAATALKKQ MWSEAQLDKR RIKEEYAIKM LPSSVSVNRA  1080
ELNFSGNVSY GTRSPFVATD GINEVVPANP QNQQEDMGNT GAERNMQLQD LSGHESLLLQ  1140
QTVYAAEKSR SEIKAYIGHK AEEIYVFKSL PLGHDRRRNR YWQFVTSPSQ NDPGCGRIFI  1200
ELHDGRWRVI DSVQDFDALL ESLDVRGIRE FHLQAMLRRI ELSFKEFSSK KLSNSGSQDG  1260
ENEKREVLDS PRRKGLVSNT PIREPLVSCV NLVCDGKDKH DTLKRYQDFE KWTWEECFNS  1320
AVLCAHKYGK ERRKQLLGVC DSCKDLFFFE DYHCTFCHKN YFISLMDFDV ANHITQCKEK  1380
REELHDVALQ KLEYLPPLTS RLLKAQLACV EASIPSEALE DFWSEDYRKY WGMKLQTASS  1440
TEDLLQILTI LESAIKSDFL SSNYETATEL LGSRDLTEYA NSFSNLETIK VPPWIPKTMS  1500
AVVLRFMEFD SSISYTMHQF EDSQRDKGSR NIITIPARYT VLRNSMEDRH EEYLHRAGTG  1560
QEDDWDVSVN MRNSSGRGRS RGRGRGGIRD GRSQRSFTGS RNESVADLTA TKNDKFGPLS  1620
GWKGRQRGRG GRKRGRRTVR SKKKPAKKAT RXXXXXXXXX XXXXXXXXAS SHQLEWDDNG  1680
AVQVELEEEN VSSSERSGFD DDNGQASGDE YDDHIVDHHY SGGFSSQSQH EMAGLDYGVG  1740
VDNVNYVDEE EEEEEEEXSG GDGDDSEDEG QVEVEEDVEE YIDGDSEEEE GNNKFTGEEE  1800
QMQNLDKDLE FSSSDYSD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	398	403	QRKRKS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027063959.1	0.0	homeobox-DDT domain protein RLT2-like isoform X1
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A068V5S3	0.0	A0A068V5S3_COFCA; Uncharacterized protein
STRING	XP_009773812.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2142	23	52