PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_13905_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB | ||||||||
Protein Properties | Length: 272aa MW: 30706.7 Da PI: 5.379 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.1 | 8.7e-18 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+++++q G g+W++ +++ g+ R++k+c++rw +yl cra_locus_13905_iso_3_len_896_ver_3 16 KGPWTKEEDDILINYINQNGHGNWRALPKKAGLLRCGKSCRLRWTNYL 63 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 50.9 | 3.5e-16 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ ++++++ lG++ W++Ia++++ gRt++++k+ w+++l cra_locus_13905_iso_3_len_896_ver_3 69 RGNFSKEEEDTIIHLHHALGNR-WSAIAARLP-GRTDNEIKNVWHTHL 114 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.3E-25 | 7 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.893 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.11E-30 | 12 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-14 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.9E-16 | 16 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.25E-11 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 25.059 | 64 | 118 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-26 | 67 | 119 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-14 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-15 | 69 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.12E-9 | 71 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
XEMGRAPCCE KMGLKKGPWT KEEDDILINY INQNGHGNWR ALPKKAGLLR CGKSCRLRWT 60 NYLRPDIKRG NFSKEEEDTI IHLHHALGNR WSAIAARLPG RTDNEIKNVW HTHLKKKLVK 120 QSAIPDPQIS ETPRPAKLDQ YRHETAGGED SIRSSLSTEM SIHDQSNSPP HSSSSSNDDV 180 SSSNITTSCT SNSNTTENDA EMSCLLLNNL NEDFWLDLDF VSCENSWKFI GGEDVGDYCN 240 SSFIINNSSS ISDDDINFWS DPFPRAEELP QF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-25 | 14 | 118 | 5 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027351984.1 | 9e-83 | transcription factor MYB14-like | ||||
TrEMBL | A0A2U9IY38 | 0.0 | A0A2U9IY38_CATRO; MYB domain containing protein 63 | ||||
STRING | POPTR_0002s03960.1 | 7e-80 | (Populus trichocarpa) |