PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_13883_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bHLH
Protein Properties Length: 427aa    MW: 45964.2 Da    PI: 6.24
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_13883_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.91.2e-053183551254
                                           HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                                   HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                           R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  cra_locus_13883_iso_3_len_1788_ver_3 318 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 355
                                           677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.973306355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.60E-6316359No hitNo description
SuperFamilySSF474597.72E-12316371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.4E-9320363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
EFGGGFGYWS SSSPHELLDM MKTRSCGDGD GDDEYYSGGG GGGGSAASDG SVVIHKPNQN  60
QPDSASGGLS MDSGSLKIMG NIGISSSSSS SSSSTTDWIN NPANFLQNGS NGTILEQQHR  120
NSSMNNYGQS DGGGGEIQKD MMSWVDNLNN FSTLIPHNDD HQDFPLNSSS SSSYGINYSS  180
TTTYNSPPPP HDQPQTQSLF GNYQRNLNQF LPNSNLANKF SPLTNSSSSS SLPPAAVLND  240
FRPTNLFATT QSHLLSSTFN DKTYTTTLTN LSTAKGSNEE VTLGNLGSVA KKNSSSELPA  300
FKRPRIETPS PLPTFKVRKE KLGDRITALQ QLVSPFGKTD TASVLHEAIE YIKFLHDQVN  360
VLSTPYMRNG SPIQRQQSGD IKKRDQQGGK QDLRSRGLCL VPISSTFPVA AETTTDFWTP  420
TFGATFR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027105081.11e-107transcription factor bHLH112-like
TrEMBLA0A068TUL31e-105A0A068TUL3_COFCA; Uncharacterized protein
STRINGVIT_00s0274g00070.t011e-89(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8602486