PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_13883_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 109aa MW: 12182.8 Da PI: 9.7162

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_13883_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.3	4.2e-06	4	37	16	54
HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + +++ L++l+ + +K + a++L +A+eYIk L cra_locus_13883_iso_2_len_834_ver_3 4 LGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 37 558899999999998.....8****************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.06E-12	1	53	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.017	1	37	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.35E-5	2	41	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.6E-10	2	45	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0042631	Biological Process	cellular response to water deprivation
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0071215	Biological Process	cellular response to abscisic acid stimulus
GO:0071472	Biological Process	cellular response to salt stress
GO:2000214	Biological Process	regulation of proline metabolic process
GO:2000377	Biological Process	regulation of reactive oxygen species metabolic process
GO:0005634	Cellular Component	nucleus
GO:0001046	Molecular Function	core promoter sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 109 aa Download sequence Send to blast
KEKLGDRITA LQQLVSPFGK TDTASVLHEA IEYIKFLHDQ VNVLSTPYMR NGSPIQRQQS 60 GDIKKRDQQG GKQDLRSRGL CLVPISSTFP VAAETTTDFW TPTFGATFR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027158812.1	3e-63	transcription factor bHLH112
Swissprot	Q8GXT3	2e-47	BH123_ARATH; Transcription factor bHLH123
TrEMBL	A0A068TUL3	9e-62	A0A068TUL3_COFCA; Uncharacterized protein
STRING	POPTR_0011s03560.1	9e-59	(Populus trichocarpa)
STRING	XP_004293560.1	5e-59	(Fragaria vesca)

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]