PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_13883_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bHLH
Protein Properties Length: 350aa    MW: 38334.9 Da    PI: 7.7832
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_13883_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.38.8e-062412781254
                                           HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                                   HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                           R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  cra_locus_13883_iso_1_len_1557_ver_3 241 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 278
                                           677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.973229278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-12239294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.86E-6239282No hitNo description
Gene3DG3DSA:4.10.280.106.3E-9243286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
EFGGGFGYXS SSSSSSSTTD WINNPANFLQ NGSNGTILEQ QHRNSSMNNY GQSDGGGGEI  60
QKDMMSWVDN LNNFSTLIPH NDDHQDFPLN SSSSSSYGIN YSSTTTYNSP PPPHDQPQTQ  120
SLFGNYQRNL NQFLPNSNLA NKFSPLTNSS SSSSLPPAAV LNDFRPTNLF ATTQSHLLSS  180
TFNDKTYTTT LTNLSTAKGS NEEVTLGNLG SVAKKNSSSE LPAFKRPRIE TPSPLPTFKV  240
RKEKLGDRIT ALQQLVSPFG KTDTASVLHE AIEYIKFLHD QVNVLSTPYM RNGSPIQRQQ  300
SGDIKKRDQQ GGKQDLRSRG LCLVPISSTF PVAAETTTDF WTPTFGATFR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027105081.11e-98transcription factor bHLH112-like
RefseqXP_027111616.11e-98transcription factor bHLH112-like
SwissprotQ94JL31e-54BH112_ARATH; Transcription factor bHLH112
TrEMBLA0A068TUL39e-97A0A068TUL3_COFCA; Uncharacterized protein
STRINGVIT_00s0274g00070.t014e-82(Vitis vinifera)
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen HC, et al.
    The function of OsbHLH068 is partially redundant with its homolog, AtbHLH112, in the regulation of the salt stress response but has opposite functions to control flowering in Arabidopsis.
    Plant Mol. Biol., 2017. 94(4-5): p. 531-548
    [PMID:28631168]