PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_1384_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bZIP
Protein Properties Length: 386aa    MW: 40924.1 Da    PI: 6.1187
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_1384_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_177.22.1e-24286348163
                                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                                          e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+++v++L++eN+aL++el++l++e++kl+se+
  cra_locus_1384_iso_2_len_2018_ver_3 286 ERELKRQKRKQSNRESARRSRLRKQAECEELQQRVETLSNENRALRDELQRLSEECEKLTSEN 348
                                          89***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077775.9E-33194IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165963.8E-12118256No hitNo description
Gene3DG3DSA:1.20.5.1706.1E-21281345No hitNo description
PfamPF001701.4E-21286348IPR004827Basic-leucine zipper domain
SMARTSM003386.0E-23286350IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.702288351IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.56E-12289345No hitNo description
CDDcd147021.14E-24291341No hitNo description
PROSITE patternPS000360293308IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010629Biological Processnegative regulation of gene expression
GO:0090342Biological Processregulation of cell aging
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MGAGEESTAT KSSKPSSSSQ ETAPVAPAYP DWSSSMQAYY GAGATPPFFA STVASPTPHP  60
YMWGGQHPLM PPYGTPVPYP ALYPPGGVYA HPTMATTPGT TQANAESDAV KVSEGKDRPT  120
SKRSRGASGN HGLVAAKVAE SGKAASESGN DGATQSAESG SEGSSDGSDE NNNHELSGTK  180
KGSFEQMLAD GTLFTALPLD LNLLVSISNS HVKLPGATAQ NSTAIANFPN SVPGNPVAMP  240
ATNLNIGMDL WNASSAAPGA MKMRPSHGVP SAVAPGMVND QWIQDERELK RQKRKQSNRE  300
SARRSRLRKQ AECEELQQRV ETLSNENRAL RDELQRLSEE CEKLTSENNS IKDELTRVCG  360
PEAVSKLESS SITKQQLQSR GNEHES
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1302308RRSRLRK
2302309RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00039PBMTransfer from AT4G36730Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027178966.10.0G-box-binding factor 1
RefseqXP_027178967.10.0G-box-binding factor 1
SwissprotP427741e-110GBF1_ARATH; G-box-binding factor 1
TrEMBLQ9ARI70.0Q9ARI7_CATRO; G-box binding factor bZIP transcription factor (Fragment)
STRINGXP_009803268.11e-164(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37802446
Publications ? help Back to Top
  1. Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S
    Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development.
    Mol Plant, 2013. 6(6): p. 1758-68
    [PMID:24157607]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Karumuri S,Bandopadhyay R
    In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana.
    Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9
    [PMID:25630103]
  4. Smykowski A,Zimmermann P,Zentgraf U
    CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 1164-7
    [PMID:26826725]
  5. Smykowski A,Fischer SM,Zentgraf U
    Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1.
    Plants (Basel), 2015. 4(3): p. 691-709
    [PMID:27135347]
  6. Giri MK, et al.
    GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana.
    Plant J., 2017. 91(5): p. 802-815
    [PMID:28622438]