PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_1384_iso_1 | ||||||||
Common Name | gbf3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bZIP | ||||||||
Protein Properties | Length: 126aa MW: 14603.2 Da PI: 8.5128 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 80.3 | 2.3e-25 | 26 | 88 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+++v++L++eN+aL++el++l++e++kl+se+ cra_locus_1384_iso_1_len_1220_ver_3 26 ERELKRQKRKQSNRESARRSRLRKQAECEELQQRVETLSNENRALRDELQRLSEECEKLTSEN 88 89***********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 5.3E-21 | 21 | 85 | No hit | No description |
PRINTS | PR00041 | 7.7E-5 | 25 | 41 | IPR001630 | cAMP response element binding (CREB) protein |
Pfam | PF00170 | 3.7E-23 | 26 | 88 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 6.0E-23 | 26 | 90 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 13.702 | 28 | 91 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.81E-12 | 29 | 85 | No hit | No description |
CDD | cd14702 | 3.20E-15 | 31 | 81 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 33 | 48 | IPR004827 | Basic-leucine zipper domain |
PRINTS | PR00041 | 7.7E-5 | 43 | 63 | IPR001630 | cAMP response element binding (CREB) protein |
PRINTS | PR00041 | 7.7E-5 | 63 | 80 | IPR001630 | cAMP response element binding (CREB) protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0010629 | Biological Process | negative regulation of gene expression | ||||
GO:0090342 | Biological Process | regulation of cell aging | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence Send to blast |
MKMRPSHGVP SAVAPGMVND QWIQDERELK RQKRKQSNRE SARRSRLRKQ AECEELQQRV 60 ETLSNENRAL RDELQRLSEE CEKLTSENNS IKDELTRVCG PEAVSKLESS SITKQQLQSR 120 GNEHES |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 42 | 48 | RRSRLRK |
2 | 42 | 49 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00039 | PBM | Transfer from AT4G36730 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027075598.1 | 4e-66 | G-box-binding factor 1 | ||||
Refseq | XP_027075599.1 | 4e-66 | G-box-binding factor 1 | ||||
Refseq | XP_027075600.1 | 4e-66 | G-box-binding factor 1 | ||||
Swissprot | P42774 | 1e-42 | GBF1_ARATH; G-box-binding factor 1 | ||||
TrEMBL | Q9ARI7 | 3e-84 | Q9ARI7_CATRO; G-box binding factor bZIP transcription factor (Fragment) | ||||
STRING | XP_006425725.1 | 4e-54 | (Citrus clementina) |