PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_1383_iso_5
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ARR-B
Protein Properties Length: 503aa    MW: 56575.6 Da    PI: 7.0773
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_1383_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.72.7e-28313367156
                              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                                          k +++WtpeLH++Fv+aveqL G ++A+P++ilelmkv+gLt+++v+SHLQkYR++
  cra_locus_1383_iso_5_len_2635_ver_3 313 KSKVDWTPELHKKFVQAVEQL-GVDQAIPSRILELMKVEGLTRHNVASHLQKYRMH 367
                                          6799*****************.********************************96 PP
2Response_reg34.41.2e-12201261109
                                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTS CS
                         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepkl 72 
                                          vl+ d +++ ++ +r+ le  +y +v ++ d  eal  + +k   +++ ++ ++    +  e++k +++++ ++
  cra_locus_1383_iso_5_len_2635_ver_3  20 VLLLDRDHDSAMKMRSKLEGMDY-IVSTFCDENEALSAISNKSrgYHVAIIEVSTQ--NNGEVFKLLETAK-DM 89 
                                          7888889999999**********.***************88888899999886655..5558888888877.9* PP

                                          EEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
                         Response_reg  73 piivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                                          p i+++     +++ +++ +Ga +fl Kp + ++l++
  cra_locus_1383_iso_5_len_2635_ver_3  90 PTIMISNLHCLSTMMKCIALGAVEFLQKPLSDDKLRN 126
                                          **********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521726.55E-1516134IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.2E-1416134No hitNo description
PROSITE profilePS5011021.35719132IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.4E-820127IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.18E-821131No hitNo description
PROSITE profilePS5129415.776310369IPR017930Myb domain
SuperFamilySSF466894.39E-19311370IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.3E-28311370IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-25313367IPR006447Myb domain, plants
PfamPF002498.6E-9316365IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0045454Biological Processcell redox homeostasis
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0016491Molecular Functionoxidoreductase activity
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MVCTADDLLG WKDFPKGLKV LLLDRDHDSA MKMRSKLEGM DYIVSTFCDE NEALSAISNK  60
SRGYHVAIIE VSTQNNGEVF KLLETAKDMP TIMISNLHCL STMMKCIALG AVEFLQKPLS  120
DDKLRNIWQH VVHKAFNAGG EDVSKSLKPV KDSVISMLQL QLEKGVIDKQ VCVKEELRPE  180
QENNHDQLSG SDKYPAPSTP QLKQGERSLD DRDCHDQTNF SAEPDSGDHD GECKSVDTTA  240
GNSISESTTR SSPPPVEAVI KEEHESTYGG RNQKNAASSE DKDHTSNTTS NAVEPNRVSS  300
RHDSCGTKAS KKKSKVDWTP ELHKKFVQAV EQLGVDQAIP SRILELMKVE GLTRHNVASH  360
LQKYRMHRRH ILPKEDERKW PRLGDSAQRN HYAQKPVMAY PPYHPSQTLP AGQIYPAWVP  420
PGSYPNGVHM WGSPYYPGWQ LPAESWQWRP YSGMHADTWG CPVMPPPGSC PPFPRNDFFH  480
STRENQYRSN VPLNSCDLNP QKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A6e-17313367155Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027181008.10.0two-component response regulator-like APRR2 isoform X5
SwissprotQ6LA431e-125APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A068UXG70.0A0A068UXG7_COFCA; Uncharacterized protein
STRINGVIT_02s0012g00570.t010.0(Vitis vinifera)
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]