PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_1383_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | ARR-B | ||||||||
Protein Properties | Length: 500aa MW: 56163.1 Da PI: 6.8778 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 89.7 | 2.6e-28 | 313 | 367 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH++Fv+aveqL G ++A+P++ilelmkv+gLt+++v+SHLQkYR++ cra_locus_1383_iso_3_len_1850_ver_3 313 KSKVDWTPELHKKFVQAVEQL-GVDQAIPSRILELMKVEGLTRHNVASHLQKYRMH 367 6799*****************.********************************96 PP | |||||||
2 | Response_reg | 34.4 | 1.2e-12 | 20 | 126 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTS CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepkl 72 vl+ d +++ ++ +r+ le +y +v ++ d eal + +k +++ ++ ++ + e++k +++++ ++ cra_locus_1383_iso_3_len_1850_ver_3 20 VLLLDRDHDSAMKMRSKLEGMDY-IVSTFCDENEALSAISNKSrgYHVAIIEVSTQ--NNGEVFKLLETAK-DM 89 7888889999999**********.***************88888899999886655..5558888888877.9* PP EEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS Response_reg 73 piivvtahgeeedalealkaGakdflsKpfdpeelvk 109 p i+++ +++ +++ +Ga +fl Kp + ++l++ cra_locus_1383_iso_3_len_1850_ver_3 90 PTIMISNLHCLSTMMKCIALGAVEFLQKPLSDDKLRN 126 **********************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 6.55E-15 | 16 | 134 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 1.2E-14 | 16 | 134 | No hit | No description |
PROSITE profile | PS50110 | 21.357 | 19 | 132 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.4E-8 | 20 | 127 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.17E-8 | 21 | 131 | No hit | No description |
PROSITE profile | PS51294 | 15.776 | 310 | 369 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.3E-19 | 311 | 370 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.2E-28 | 311 | 370 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.5E-25 | 313 | 367 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.6E-9 | 316 | 365 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0045454 | Biological Process | cell redox homeostasis | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0016491 | Molecular Function | oxidoreductase activity | ||||
GO:0050660 | Molecular Function | flavin adenine dinucleotide binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 500 aa Download sequence Send to blast |
MVCTADDLLG WKDFPKGLKV LLLDRDHDSA MKMRSKLEGM DYIVSTFCDE NEALSAISNK 60 SRGYHVAIIE VSTQNNGEVF KLLETAKDMP TIMISNLHCL STMMKCIALG AVEFLQKPLS 120 DDKLRNIWQH VVHKAFNAGG EDVSKSLKPV KDSVISMLQL QLEKGVIDKQ VCVKEELRPE 180 QENNHDQLSG SDKYPAPSTP QLKQGERSLD DRDCHDQTNF SAEPDSGDHD GECKSVDTTA 240 GNSISESTTR SSPPPVEAVI KEEHESTYGG RNQKNAASSE DKDHTSNTTS NAVEPNRVSS 300 RHDSCGTKAS KKKSKVDWTP ELHKKFVQAV EQLGVDQAIP SRILELMKVE GLTRHNVASH 360 LQKYRMHRRH ILPKEDERKW PRLGDSAQRN HYAQKPVMAY PPYHPSQTLP AGQIYPAWVP 420 PGSYPNGVHM WGSPYYPGWQ LPAESWQWRP YSGMHADTWG CPVMPPPGSC PPFPRNDFFH 480 STRENQYRSN VPLNSCDLNP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 5e-17 | 313 | 367 | 1 | 55 | Transcription factor LUX |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027181008.1 | 0.0 | two-component response regulator-like APRR2 isoform X5 | ||||
Swissprot | Q6LA43 | 1e-125 | APRR2_ARATH; Two-component response regulator-like APRR2 | ||||
TrEMBL | A0A068UXG7 | 0.0 | A0A068UXG7_COFCA; Uncharacterized protein | ||||
STRING | VIT_02s0012g00570.t01 | 0.0 | (Vitis vinifera) |
Publications ? help Back to Top | |||
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