PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_13691_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | ERF | ||||||||
Protein Properties | Length: 204aa MW: 22796.5 Da PI: 8.3851 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.3 | 3.9e-18 | 7 | 54 | 2 | 53 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53 +++GVr+++ +g+Wv+eIr+p +r++lg+f tae+Aa+a+++a++ + cra_locus_13691_iso_2_len_999_ver_3 7 RFRGVRQRH-WGSWVSEIRHP-----IlkTRIWLGTFETAEDAARAYDEAARLM 54 69******9.**********8.....556*********************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.92E-35 | 6 | 66 | No hit | No description |
SMART | SM00380 | 5.8E-40 | 7 | 70 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.8E-11 | 7 | 54 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.666 | 7 | 64 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.81E-20 | 7 | 66 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.7E-33 | 7 | 64 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-10 | 8 | 19 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-10 | 30 | 46 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MARPQQRFRG VRQRHWGSWV SEIRHPILKT RIWLGTFETA EDAARAYDEA ARLMCGVRAR 60 TNFPYNPNSP PNTCSSKHLS ATLTAKLHKC YLTSLHHHHQ ISSSSSSTTI NNTKHQHQIA 120 AAGSAITAAN NHNHEAQENK PTMVVGHGQE QIKTLEDDHI EQMIQELLHY GSIELCSVPT 180 PTFAIPPPPP HFSIDTHSLP PNSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 7e-18 | 6 | 64 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00526 | DAP | Transfer from AT5G25190 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016462558.1 | 1e-74 | PREDICTED: ethylene-responsive transcription factor ERF003-like | ||||
Swissprot | Q94AW5 | 2e-73 | ERF03_ARATH; Ethylene-responsive transcription factor ERF003 | ||||
TrEMBL | A0A2N9FC12 | 3e-74 | A0A2N9FC12_FAGSY; Uncharacterized protein | ||||
STRING | XP_009758477.1 | 7e-74 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1362 | 24 | 76 |
Publications ? help Back to Top | |||
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