PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_13647_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bHLH | ||||||||
Protein Properties | Length: 244aa MW: 27488.4 Da PI: 8.9639 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.1 | 9.7e-06 | 133 | 171 | 11 | 54 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +++eYIk L cra_locus_13647_iso_1_len_1117_ver_3 133 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSETIEYIKFL 171 5778999**********998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.601 | 122 | 171 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.06E-12 | 132 | 190 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.87E-7 | 132 | 175 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 9.4E-10 | 132 | 184 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0092 | 133 | 177 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
QFSSHNNNQV ADSNVLQGFL VSPDNNQQSI NYNSYVPSSG YDHHHHHHPR PWSATFLNNT 60 PFWNASAPAG SNDGRSSFFP SLRTHQQPAP TFDDKPKQIT SEVRELGNKT SSEVSNKRPR 120 NETTPSSMPA FKVRKEKMGD RITALQQLVS PFGKTDTASV LSETIEYIKF LHEQVNVLSN 180 PYMKSGAHIQ HHQQNPEKSI KDPEGPKQDL RSRGLCLVPV PNTFPVINEP NLDFWNPTFG 240 GTYR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020553877.1 | 3e-90 | transcription factor bHLH123 | ||||
Swissprot | Q8GXT3 | 1e-59 | BH123_ARATH; Transcription factor bHLH123 | ||||
TrEMBL | A0A061F6M7 | 3e-83 | A0A061F6M7_THECC; Basic helix-loop-helix DNA-binding superfamily protein | ||||
STRING | XP_009377291.1 | 2e-85 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA860 | 24 | 86 |
Publications ? help Back to Top | |||
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