PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_13612_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bZIP
Protein Properties Length: 346aa    MW: 38122.7 Da    PI: 6.7958
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_13612_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_153.55.1e-17153208361
                                           XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                                bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                                           +lkr +r+ +NRe+ArrsR+RK+a ++ Le+ v++L +eN +L    ++l + +++ k+
  cra_locus_13612_iso_2_len_1211_ver_3 153 DLKRIKRMVSNRESARRSRRRKQAHLADLEQQVDQLRGENASLF---KQLADASQQFKD 208
                                           69**************************************9999...566666555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.1E-13150207No hitNo description
SMARTSM003381.0E-17151215IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.162153207IPR004827Basic-leucine zipper domain
PfamPF001701.0E-14154205IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.02E-12154205No hitNo description
CDDcd147021.20E-6156206No hitNo description
PROSITE patternPS000360158173IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MINQDMKKSP SQLALDELFN PTRNSEEVVV DHHHHQIKVP NDQKNLFGLA FRNPSGVGNT  60
YPRFDAANDA PLWSQNLSTK QYPSHSATID SQSSFCIGSP TSATKAKGRN NNNNNNNHRA  120
ATMATSGSSR EQSDDDDIEI ETGQCEESTD PIDLKRIKRM VSNRESARRS RRRKQAHLAD  180
LEQQVDQLRG ENASLFKQLA DASQQFKDST TNNRVLKSDV EALRAKVKLA EDMVARGSLT  240
SSLSHLLQNY LNSTAQSFST TTSTTTTSST NICSQLENVS PTITIPRGEN HPSAASYHIL  300
GVSEQNNNAT VVGHLENVEN SLKNNGGGDT VSCISDIWNW DSHVTK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167174RRSRRRKQ
2169174SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters. {ECO:0000269|PubMed:11133985}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027085393.13e-92basic leucine zipper 9-like isoform X1
SwissprotQ6H5009e-62RSBZ4_ORYSJ; bZIP transcription factor RISBZ4
TrEMBLA0A3Q8TB533e-93A0A3Q8TB53_DIOKA; Transcription factor bZIP8
STRINGXP_009801058.13e-86(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA81392229
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]