PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_13612_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bZIP
Protein Properties Length: 345aa    MW: 38008.6 Da    PI: 6.7958
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_13612_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_153.55.1e-17152207361
                                           XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                                bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                                           +lkr +r+ +NRe+ArrsR+RK+a ++ Le+ v++L +eN +L    ++l + +++ k+
  cra_locus_13612_iso_1_len_1208_ver_3 152 DLKRIKRMVSNRESARRSRRRKQAHLADLEQQVDQLRGENASLF---KQLADASQQFKD 207
                                           69**************************************9999...566666555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.1E-13149206No hitNo description
SMARTSM003381.0E-17150214IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.162152206IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.02E-12153204No hitNo description
PfamPF001701.0E-14153204IPR004827Basic-leucine zipper domain
CDDcd147021.20E-6155205No hitNo description
PROSITE patternPS000360157172IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MINQDMKKSP SQLALDELFN PTRNSEEVVV DHHHHQIKVP NDQKNLFGLA FRNPSGVGNT  60
YPRFDAANDA PLWSQNLSTK QYPSHSATID SQSSFCIGSP TSATKAKGRN NNNNNNHRAA  120
TMATSGSSRE QSDDDDIEIE TGQCEESTDP IDLKRIKRMV SNRESARRSR RRKQAHLADL  180
EQQVDQLRGE NASLFKQLAD ASQQFKDSTT NNRVLKSDVE ALRAKVKLAE DMVARGSLTS  240
SLSHLLQNYL NSTAQSFSTT TSTTTTSSTN ICSQLENVSP TITIPRGENH PSAASYHILG  300
VSEQNNNATV VGHLENVENS LKNNGGGDTV SCISDIWNWD SHVTK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166173RRSRRRKQ
2168173SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters. {ECO:0000269|PubMed:11133985}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027085393.13e-92basic leucine zipper 9-like isoform X1
SwissprotQ6H5007e-62RSBZ4_ORYSJ; bZIP transcription factor RISBZ4
TrEMBLA0A3Q8TB532e-93A0A3Q8TB53_DIOKA; Transcription factor bZIP8
STRINGXP_009801058.13e-86(Nicotiana sylvestris)
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]