PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_13549_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

G2-like

Protein Properties

Length: 388aa MW: 43206.8 Da PI: 8.9009

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_13549_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98	6.9e-31	235	290	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r+ W+peLH+rFv+a++qLGG+++AtPk+i+ lm+v +Lt+++vkSHLQkYRl+ cra_locus_13549_iso_1_len_1440_ver_3 235 KQRRSWSPELHRRFVNALQQLGGPKVATPKQIRGLMQVADLTNDEVKSHLQKYRLH 290 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.707	232	292	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.1E-27	232	294	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.84E-16	232	293	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.8E-26	235	290	IPR006447	Myb domain, plants
Pfam	PF00249	8.2E-7	237	288	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010092	Biological Process	specification of organ identity
GO:0010629	Biological Process	negative regulation of gene expression
GO:0048449	Biological Process	floral organ formation
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MGLASNELNS KSGYGFVQKS ISEFLQEIAV IQENGKKLAK INGFVFELEN EMKKIRVFKR 60 ELPVCMLLLG DAIEQLKEEG NRCKGRKGAM VEELIPSGRA KESIIDLNEK KNWMSSAQLW 120 TPTAPVEYDD NCRNLRFKDS FFLYPNSMNQ EIDNGIGKRT QLGSSWNVIN NRGGAFVPFQ 180 GATIQGDDLV GNGLTLSQPV ARMSSFGGGG TSSQQAILPE QKEQVQEKEQ QQQRKQRRSW 240 SPELHRRFVN ALQQLGGPKV ATPKQIRGLM QVADLTNDEV KSHLQKYRLH VRKMASMSGT 300 SSSSLNLNID DGLRRRYGMM NGENFKTTAQ SSCSPEGPLS YMGGSSLSKG VSVSLTIAGT 360 ESFEEEEEDD TKSESYCWKL GNAAHRSR

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MGLASNELNS KSGYGFVQKS ISEFLQEIAV IQENGKKLAK INGFVFELEN EMKKIRVFKR  60
ELPVCMLLLG DAIEQLKEEG NRCKGRKGAM VEELIPSGRA KESIIDLNEK KNWMSSAQLW  120
TPTAPVEYDD NCRNLRFKDS FFLYPNSMNQ EIDNGIGKRT QLGSSWNVIN NRGGAFVPFQ  180
GATIQGDDLV GNGLTLSQPV ARMSSFGGGG TSSQQAILPE QKEQVQEKEQ QQQRKQRRSW  240
SPELHRRFVN ALQQLGGPKV ATPKQIRGLM QVADLTNDEV KSHLQKYRLH VRKMASMSGT  300
SSSSLNLNID DGLRRRYGMM NGENFKTTAQ SSCSPEGPLS YMGGSSLSKG VSVSLTIAGT  360
ESFEEEEEDD TKSESYCWKL GNAAHRSR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00475	DAP	Transfer from AT4G37180	Download

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8497	22	29