PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_1350_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GRAS
Protein Properties Length: 582aa    MW: 64945.2 Da    PI: 6.4712
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_1350_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS426.32.4e-1302125811373
                                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekns 74 
                                          l+elL+ecA+a+ +++le  ++l+++ +  +s +g+p+qRl ay+ e+L ar   s++++y+al+++e +    
  cra_locus_1350_iso_1_len_2418_ver_3 212 LKELLVECARALYENKLEYFEELVEKARAAVSISGEPIQRLGAYIIEGLVARKELSGTNIYRALRCNEPE---G 282
                                          5799**************************************************9**************9...9 PP

                                 GRAS  75 seelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvg 148
                                           + l+++++++ev+P+lkf++++aN aI ea  +e+r+Hi+Df+i qG+QW++LlqaLa+Rp+g+p++RiTg++
  cra_locus_1350_iso_1_len_2418_ver_3 283 RDLLSYMHILYEVCPYLKFGYMAANGAIAEACRNEDRIHIVDFQIAQGTQWMTLLQALAARPSGAPHVRITGID 356
                                          ************************************************************************** PP

                                 GRAS 149 spesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsl 220
                                          +p s+  + e l ++++rLa + e++++p+ef++ v     d++ ++L+v+pgEalaVn+ lqlh+++desv++
  cra_locus_1350_iso_1_len_2418_ver_3 357 DPVSQyaRGEGLVAVAKRLAAISEKFNIPVEFHA-VPVFAPDVTKDMLDVRPGEALAVNFPLQLHHTPDESVDV 429
                                          **999999**************************.6888999******************************** PP

                                 GRAS 221 eserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                                          +++rd +L++vksl+Pkvv++veqe+++n+++F  rfleal+yysa+f+s+++++pre +eri+vE+++l+r+i
  cra_locus_1350_iso_1_len_2418_ver_3 430 NNPRDGLLRMVKSLNPKVVTLVEQESNTNTAPFIPRFLEALDYYSAMFESIDVTMPRERKERINVEQHCLARDI 503
                                          ************************************************************************** PP

                                 GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLv 368
                                          vn++aceg+er+erhe ++kW++r+++aGF+++pls+++++ ++ llr ++ + y++ e++g+++lgWk+r+L+
  cra_locus_1350_iso_1_len_2418_ver_3 504 VNIIACEGKERVERHELFGKWKSRFTMAGFRQYPLSSYVNSVIRNLLRCYS-EHYTLVEKDGAMLLGWKHRNLI 576
                                          ***********************************************9999.66******************** PP

                                 GRAS 369 svSaW 373
                                          s+SaW
  cra_locus_1350_iso_1_len_2418_ver_3 577 SASAW 581
                                          ***** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.145186563IPR005202Transcription factor GRAS
PfamPF035148.5E-128212581IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MDSRQVFGYG VTGADFSYSS YPAIPSIPNR LFGSLKFDLR NSPNSHLLNH FDSETLITFS  60
DGQEQQSSTE NLSEASPSCN SSQNYSSHHQ HLSPSPDSCH ERQITSSAGT SYFQNVNHGH  120
NMQHALLQLE SALMGPDEEA TASAPSMGEN KRPQTSGQRS RSWSQEIHGS QSAQSQPSCV  180
SPFGKSGDGI STEKRLKGIE ELSLKGIPPG NLKELLVECA RALYENKLEY FEELVEKARA  240
AVSISGEPIQ RLGAYIIEGL VARKELSGTN IYRALRCNEP EGRDLLSYMH ILYEVCPYLK  300
FGYMAANGAI AEACRNEDRI HIVDFQIAQG TQWMTLLQAL AARPSGAPHV RITGIDDPVS  360
QYARGEGLVA VAKRLAAISE KFNIPVEFHA VPVFAPDVTK DMLDVRPGEA LAVNFPLQLH  420
HTPDESVDVN NPRDGLLRMV KSLNPKVVTL VEQESNTNTA PFIPRFLEAL DYYSAMFESI  480
DVTMPRERKE RINVEQHCLA RDIVNIIACE GKERVERHEL FGKWKSRFTM AGFRQYPLSS  540
YVNSVIRNLL RCYSEHYTLV EKDGAMLLGW KHRNLISASA WH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-632165828375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027171108.10.0chitin-inducible gibberellin-responsive protein 1-like
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A068UBH10.0A0A068UBH1_COFCA; Uncharacterized protein
STRINGVIT_19s0014g04940.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34412448
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]