PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_13318_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Dof

Protein Properties

Length: 321aa MW: 35143.7 Da PI: 7.2497

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_13318_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	110.8	6.3e-35	63	118	4	59
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 + l+cprC stntkfCyynny+ sqPr+fCk+C+r+WtkGG+lrnvPvGggr++++ cra_locus_13318_iso_1_len_1216_ver_3 63 EVLNCPRCGSTNTKFCYYNNYNKSQPRHFCKGCKRHWTKGGTLRNVPVGGGRKNKR 118 6789**********************************************976655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-23	63	118	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.6E-31	64	117	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.186	65	119	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	67	103	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MGVSTKQASL DHETLDFWSP TLMESSSAAA AAETGDHDDQ LPKPPQQPTT RRQQQQQQQX 60 KMEVLNCPRC GSTNTKFCYY NNYNKSQPRH FCKGCKRHWT KGGTLRNVPV GGGRKNKRLK 120 PSPGLTTPAT GLGLTPSQSQ NVPLQRQDWS KGEFAHKLVV TRDHSQQNGH MFPIGHDKDI 180 ISDSILFKAM INGSSKNSLG HDDPMINAYK GTSTSNSSDQ NLQLCFSSLN PLESIQSGVP 240 SFFNQSLING YDLGMESSTI TTVSNPAAGA SSIFGEGWQV PSKLSSGSSS VVAEMGNYSW 300 NWNEIDTLVS ADDLNIPWPD E

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6171	20	33