PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | cra_locus_13295_iso_5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 185aa MW: 21056.3 Da PI: 10.3811 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 21.7 | 6.8e-07 | 35 | 117 | 5 | 88 |
FAR1 5 eYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek 72 e+A + G+ v++++skk + + C + g ++++k+ + ++r++ + t+C +l+ kke cra_locus_13295_iso_5_len_931_ver_3 35 EFAISQGYVVTIKQSKKD------KVVVLGCDRGGVYRNRRKTvdetsgELARKRKSGSRLTNCPFELVGKKE- 101 578888888888887776......456799*****99999999888886666777888889*******99998. PP FAR1 73 dgkwevtkleleHnHe 88 dg w++t + HnHe cra_locus_13295_iso_5_len_931_ver_3 102 DGLWVLTVKNGSHNHE 117 ***************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.6E-5 | 35 | 118 | IPR004330 | FAR1 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0004491 | Molecular Function | methylmalonate-semialdehyde dehydrogenase (acylating) activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 185 aa Download sequence Send to blast |
MVVTNFMEFT DTLQMLPPPP GSFIDREELI QHVGEFAISQ GYVVTIKQSK KDKVVVLGCD 60 RGGVYRNRRK TVDETSGELA RKRKSGSRLT NCPFELVGKK EDGLWVLTVK NGSHNHEALK 120 DLSEHPSARR FTEKEVLLIK EMTEAGLKPR QILKRLRQSN PELLSTPKHV YNIKAKLRQG 180 NMTGW |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 67 | 83 | RRKTVDETSGELARKRK |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027112775.1 | 1e-119 | methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial-like isoform X1 | ||||
TrEMBL | A0A068TM10 | 1e-117 | A0A068TM10_COFCA; Uncharacterized protein | ||||
STRING | Migut.B00534.1.p | 1e-107 | (Erythranthe guttata) |