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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | cra_locus_13213_iso_1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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| Family | bHLH | ||||||||
| Protein Properties | Length: 195aa MW: 21464.5 Da PI: 10.2595 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 41.4 | 2.6e-13 | 5 | 47 | 8 | 55 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
E+ RRd+i++++ L++l+P++ K + a+iL Av+YIk Lq
cra_locus_13213_iso_1_len_752_ver_3 5 FEKIRRDNIKKKIKALQDLIPNC-----SKRDTASILDDAVKYIKALQ 47
69********************9.....799****************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50888 | 15.021 | 1 | 46 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 2.75E-17 | 3 | 72 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 2.2E-16 | 3 | 67 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 8.0E-14 | 3 | 52 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 2.94E-14 | 6 | 51 | No hit | No description |
| Pfam | PF00010 | 9.2E-11 | 6 | 47 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 195 aa Download sequence Send to blast |
MRKVFEKIRR DNIKKKIKAL QDLIPNCSKR DTASILDDAV KYIKALQNQV QMMSIRAGAL 60 FQAQYMLQAN YPGLQVPQNP HYMHMIPRIG MGIHGMSSAP LYMMPFTFPG PWQSNLAASG 120 MPMVGPTPEL QQQIHSYNSF HSADSNMSMA NPISASGQNQ VPISSGSSDI IKHQPASGIX 180 LVKLAIMILA SGNTX |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 5 | 11 | EKIRRDN |
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA15248 | 8 | 8 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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