PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_13212_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Nin-like

Protein Properties

Length: 930aa MW: 103690 Da PI: 6.48

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_13212_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.9	2e-28	613	663	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 e++i+l+ l++yF++++kdAAk++gvc+T+LKriCRq+GIkRWP+Rkik++ cra_locus_13212_iso_2_len_3376_ver_3 613 ESTITLQILRQYFAGSLKDAAKSIGVCPTTLKRICRQHGIKRWPSRKIKKV 663 789**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.655	602	683	IPR003035	RWP-RK domain
Pfam	PF02042	5.4E-25	615	663	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.15E-22	824	911	No hit	No description
PROSITE profile	PS51745	24.301	830	913	IPR000270	PB1 domain
SMART	SM00666	5.8E-25	830	913	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	2.6E-21	831	909	No hit	No description
CDD	cd06407	3.61E-37	832	910	No hit	No description
Pfam	PF00564	4.8E-17	832	910	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 930 aa Download sequence Send to blast
MDEGVSTQNN MLDVQSDSLM DLDYMDELLL EGCWLETADG SEFLHHSPSN FNALFDSSFT 60 WPTFEDNSGG ICSPSKGFQE ERQRSSSFTE NPSVSEYHKA RDSSKLDSVD ENVNNAAVCS 120 SSHSGNSLAN AFELNRRWWI GPSTSAPVME RLVRALGYIK DWSREKDVLI QIWVPVNKGG 180 RHVLTTSDQP FSLDLNSRRL ACYRDVSVNY QFPAEEDSKE IVGLPGRVFN GKVPEWTPDV 240 QFFRKDEYAR VGHAEQYDVR GTLAVPVFEQ GSQNCLGVIE VVFTTRKINY CPELENVCKA 300 LKAVELSCDT SSTPDTKACD FSFQAALPEI KEVLRVACRT HRLPLAQAWV PCIQQGKRGS 360 RHSDENFIHC VSTVDSACYI GDPAIQGFNE ACSEHHLLKG QGIVGRAFTT NQPCFSPDIT 420 SYSKTDYPLS HHARMFGLRA AVAIRLRSIH AGSTDFVLEF FLPLDCKDPE EHKRMLSSLS 480 IIIQKVSHSL RVVTDKELQD EAALPTDGTS SPSIIFSEKM PEVEHSHATM VSQERSSQTT 540 RPVEAEESFS FASESRTGNA REVIAGKVSQ LGQCDPDASS KTTISFQDSH LSSGDYNLPN 600 ANKTGEKKRA KAESTITLQI LRQYFAGSLK DAAKSIGVCP TTLKRICRQH GIKRWPSRKI 660 KKVGHSLQKI QRVIDSVQGA SGDLHIESFY RNFPELASSN VSRTGTFSSF KSGDTPEPSK 720 TKPEGGGLNP AALVSTSPSS SCSHSSDSSQ CFSSGTQQHP PQSLHVSVQD ESVNRLLKRV 780 RSDAELHLSS EGPKFLQRSN SHASFIEHSK LERVPPQKEA RHQNQQEQIA QRIKVSYGEE 840 NIRFRMQRNW GYEDLMREIC RRFGILNSDG FHLKYLDDDS EWVLMTCDAD LEECIDVCRS 900 SLNQTIRLSL LRDSQQHCGS SSGTSCLRID

Sequence ? help Back to Top

Protein Sequence Length: 930 aa Download sequence Send to blast

MDEGVSTQNN MLDVQSDSLM DLDYMDELLL EGCWLETADG SEFLHHSPSN FNALFDSSFT  60
WPTFEDNSGG ICSPSKGFQE ERQRSSSFTE NPSVSEYHKA RDSSKLDSVD ENVNNAAVCS  120
SSHSGNSLAN AFELNRRWWI GPSTSAPVME RLVRALGYIK DWSREKDVLI QIWVPVNKGG  180
RHVLTTSDQP FSLDLNSRRL ACYRDVSVNY QFPAEEDSKE IVGLPGRVFN GKVPEWTPDV  240
QFFRKDEYAR VGHAEQYDVR GTLAVPVFEQ GSQNCLGVIE VVFTTRKINY CPELENVCKA  300
LKAVELSCDT SSTPDTKACD FSFQAALPEI KEVLRVACRT HRLPLAQAWV PCIQQGKRGS  360
RHSDENFIHC VSTVDSACYI GDPAIQGFNE ACSEHHLLKG QGIVGRAFTT NQPCFSPDIT  420
SYSKTDYPLS HHARMFGLRA AVAIRLRSIH AGSTDFVLEF FLPLDCKDPE EHKRMLSSLS  480
IIIQKVSHSL RVVTDKELQD EAALPTDGTS SPSIIFSEKM PEVEHSHATM VSQERSSQTT  540
RPVEAEESFS FASESRTGNA REVIAGKVSQ LGQCDPDASS KTTISFQDSH LSSGDYNLPN  600
ANKTGEKKRA KAESTITLQI LRQYFAGSLK DAAKSIGVCP TTLKRICRQH GIKRWPSRKI  660
KKVGHSLQKI QRVIDSVQGA SGDLHIESFY RNFPELASSN VSRTGTFSSF KSGDTPEPSK  720
TKPEGGGLNP AALVSTSPSS SCSHSSDSSQ CFSSGTQQHP PQSLHVSVQD ESVNRLLKRV  780
RSDAELHLSS EGPKFLQRSN SHASFIEHSK LERVPPQKEA RHQNQQEQIA QRIKVSYGEE  840
NIRFRMQRNW GYEDLMREIC RRFGILNSDG FHLKYLDDDS EWVLMTCDAD LEECIDVCRS  900
SLNQTIRLSL LRDSQQHCGS SSGTSCLRID

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027149959.1	0.0	protein NLP5-like isoform X1
Refseq	XP_027149960.1	0.0	protein NLP5-like isoform X1
Refseq	XP_027149961.1	0.0	protein NLP5-like isoform X1
Refseq	XP_027149962.1	0.0	protein NLP5-like isoform X1
Refseq	XP_027149963.1	0.0	protein NLP5-like isoform X1
Refseq	XP_027149964.1	0.0	protein NLP5-like isoform X1
Refseq	XP_027149965.1	0.0	protein NLP5-like isoform X1
TrEMBL	A0A068UFQ1	0.0	A0A068UFQ1_COFCA; Uncharacterized protein
STRING	XP_009759077.1	0.0	(Nicotiana sylvestris)