PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_13212_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Nin-like

Protein Properties

Length: 957aa MW: 106933 Da PI: 6.4056

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_13212_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.9	2e-28	640	690	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 e++i+l+ l++yF++++kdAAk++gvc+T+LKriCRq+GIkRWP+Rkik++ cra_locus_13212_iso_1_len_3459_ver_3 640 ESTITLQILRQYFAGSLKDAAKSIGVCPTTLKRICRQHGIKRWPSRKIKKV 690 789**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.655	629	710	IPR003035	RWP-RK domain
Pfam	PF02042	5.6E-25	642	690	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.4E-22	851	938	No hit	No description
SMART	SM00666	5.8E-25	857	940	IPR000270	PB1 domain
PROSITE profile	PS51745	24.301	857	940	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	2.7E-21	858	936	No hit	No description
Pfam	PF00564	5.0E-17	859	937	IPR000270	PB1 domain
CDD	cd06407	3.87E-37	859	937	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 957 aa Download sequence Send to blast
MDEGVSTQNN MLDVQSDSLM DLDYMDELLL EGCWLETADG SEFLHHSPSN FNALFDSSFT 60 WPTFEDNSGG ICSPSKGFQE ERQRSSSFTE NPSVSEYHKA RDSSKLDSVD ENVNNAAVCS 120 SSHSGNSLAN AFELNRRWWI GPSTSAPVME RLVRALGYIK DWSREKDVLI QIWVPVNKGG 180 RHVLTTSDQP FSLDLNSRRL ACYRDVSVNY QFPAEEDSKE IVGLPGRVFN GKVPEWTPDV 240 QFFRKDEYAR VGHAEQYDVR GTLAVPVFEQ GSQNCLGVIE VVFTTRKINY CPELENVCKA 300 LKKPCPYDWX EFLLNLNFDM SLDMMHPGKA VELSCDTSST PDTKACDFSF QAALPEIKEV 360 LRVACRTHRL PLAQAWVPCI QQGKRGSRHS DENFIHCVST VDSACYIGDP AIQGFNEACS 420 EHHLLKGQGI VGRAFTTNQP CFSPDITSYS KTDYPLSHHA RMFGLRAAVA IRLRSIHAGS 480 TDFVLEFFLP LDCKDPEEHK RMLSSLSIII QKVSHSLRVV TDKELQDEAA LPTDGTSSPS 540 IIFSEKMPEV EHSHATMVSQ ERSSQTTRPV EAEESFSFAS ESRTGNAREV IAGKVSQLGQ 600 CDPDASSKTT ISFQDSHLSS GDYNLPNANK TGEKKRAKAE STITLQILRQ YFAGSLKDAA 660 KSIGVCPTTL KRICRQHGIK RWPSRKIKKV GHSLQKIQRV IDSVQGASGD LHIESFYRNF 720 PELASSNVSR TGTFSSFKSG DTPEPSKTKP EGGGLNPAAL VSTSPSSSCS HSSDSSQCFS 780 SGTQQHPPQS LHVSVQDESV NRLLKRVRSD AELHLSSEGP KFLQRSNSHA SFIEHSKLER 840 VPPQKEARHQ NQQEQIAQRI KVSYGEENIR FRMQRNWGYE DLMREICRRF GILNSDGFHL 900 KYLDDDSEWV LMTCDADLEE CIDVCRSSLN QTIRLSLLRD SQQHCGSSSG TSCLRID

Sequence ? help Back to Top

Protein Sequence Length: 957 aa Download sequence Send to blast

MDEGVSTQNN MLDVQSDSLM DLDYMDELLL EGCWLETADG SEFLHHSPSN FNALFDSSFT  60
WPTFEDNSGG ICSPSKGFQE ERQRSSSFTE NPSVSEYHKA RDSSKLDSVD ENVNNAAVCS  120
SSHSGNSLAN AFELNRRWWI GPSTSAPVME RLVRALGYIK DWSREKDVLI QIWVPVNKGG  180
RHVLTTSDQP FSLDLNSRRL ACYRDVSVNY QFPAEEDSKE IVGLPGRVFN GKVPEWTPDV  240
QFFRKDEYAR VGHAEQYDVR GTLAVPVFEQ GSQNCLGVIE VVFTTRKINY CPELENVCKA  300
LKKPCPYDWX EFLLNLNFDM SLDMMHPGKA VELSCDTSST PDTKACDFSF QAALPEIKEV  360
LRVACRTHRL PLAQAWVPCI QQGKRGSRHS DENFIHCVST VDSACYIGDP AIQGFNEACS  420
EHHLLKGQGI VGRAFTTNQP CFSPDITSYS KTDYPLSHHA RMFGLRAAVA IRLRSIHAGS  480
TDFVLEFFLP LDCKDPEEHK RMLSSLSIII QKVSHSLRVV TDKELQDEAA LPTDGTSSPS  540
IIFSEKMPEV EHSHATMVSQ ERSSQTTRPV EAEESFSFAS ESRTGNAREV IAGKVSQLGQ  600
CDPDASSKTT ISFQDSHLSS GDYNLPNANK TGEKKRAKAE STITLQILRQ YFAGSLKDAA  660
KSIGVCPTTL KRICRQHGIK RWPSRKIKKV GHSLQKIQRV IDSVQGASGD LHIESFYRNF  720
PELASSNVSR TGTFSSFKSG DTPEPSKTKP EGGGLNPAAL VSTSPSSSCS HSSDSSQCFS  780
SGTQQHPPQS LHVSVQDESV NRLLKRVRSD AELHLSSEGP KFLQRSNSHA SFIEHSKLER  840
VPPQKEARHQ NQQEQIAQRI KVSYGEENIR FRMQRNWGYE DLMREICRRF GILNSDGFHL  900
KYLDDDSEWV LMTCDADLEE CIDVCRSSLN QTIRLSLLRD SQQHCGSSSG TSCLRID

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027149959.1	0.0	protein NLP5-like isoform X1
Refseq	XP_027149960.1	0.0	protein NLP5-like isoform X1
Refseq	XP_027149961.1	0.0	protein NLP5-like isoform X1
Refseq	XP_027149962.1	0.0	protein NLP5-like isoform X1
Refseq	XP_027149963.1	0.0	protein NLP5-like isoform X1
Refseq	XP_027149964.1	0.0	protein NLP5-like isoform X1
Refseq	XP_027149965.1	0.0	protein NLP5-like isoform X1
TrEMBL	A0A068UFQ1	0.0	A0A068UFQ1_COFCA; Uncharacterized protein
STRING	XP_009759077.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1598	24	67