PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_13127_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Trihelix

Protein Properties

Length: 360aa MW: 39692.3 Da PI: 6.94

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_13127_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	61.7	1.7e-19	39	131	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrer.gf..erspkqCkekwenlnkrykkikegek. 69 +W+++e+ aLi+a+r+++ +lrrg+l++++W+ev++ +++r ++ ++++qC++k+e+l+kry+++ +++ cra_locus_13127_iso_3_len_1468_ver_3 39 CWSHDETIALIDAYRDKWYSLRRGNLRATHWQEVADDVASRcPVipPKTAVQCRHKMEKLRKRYRAEIQRAAp 111 8***********************************5541334589***************99998752 PP trihelix 70 ...krtsessstcpyfdqle 86 +r+ + s +++f++++ cra_locus_13127_iso_3_len_1468_ver_3 112 yggSRSHRYCSAWVHFKRMD 131 21144556667788899887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.7E-21	38	133	No hit	No description
PROSITE profile	PS50090	6.017	40	99	IPR017877	Myb-like domain
SMART	SM00595	3.1E-11	47	138	IPR006578	MADF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MAGSSPSGQD HPGGASSLEG KPTVTIATAA ASRRLPPPCW SHDETIALID AYRDKWYSLR 60 RGNLRATHWQ EVADDVASRC PVIPPKTAVQ CRHKMEKLRK RYRAEIQRAA PYGGSRSHRY 120 CSAWVHFKRM DAMEKGPSAS AAAPVDEDEE EDHEDSRVKP IGDIYSNNSN HNTYSYKNTS 180 NNRSVGSMAN GGTGFRIRIQ GKGSGPSSAK VYSKFDEMVG QNPNFNVNPG VNYGSNKGTR 240 DGFCGRADMG KRIVGGDVEK GDPVAEMVAA IKVLGDGFVK IERMKMDMAR EVEEMRMEME 300 MKRTEMILES QQRIVDAFAK AISXEEKQEG EEINQCGMLD DAMQLYSLAE SLAEFMVGGG

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MAGSSPSGQD HPGGASSLEG KPTVTIATAA ASRRLPPPCW SHDETIALID AYRDKWYSLR  60
RGNLRATHWQ EVADDVASRC PVIPPKTAVQ CRHKMEKLRK RYRAEIQRAA PYGGSRSHRY  120
CSAWVHFKRM DAMEKGPSAS AAAPVDEDEE EDHEDSRVKP IGDIYSNNSN HNTYSYKNTS  180
NNRSVGSMAN GGTGFRIRIQ GKGSGPSSAK VYSKFDEMVG QNPNFNVNPG VNYGSNKGTR  240
DGFCGRADMG KRIVGGDVEK GDPVAEMVAA IKVLGDGFVK IERMKMDMAR EVEEMRMEME  300
MKRTEMILES QQRIVDAFAK AISXEEKQEG EEINQCGMLD DAMQLYSLAE SLAEFMVGGG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027106612.1	1e-157	trihelix transcription factor ASIL2-like
TrEMBL	A0A068ULR5	1e-156	A0A068ULR5_COFCA; Uncharacterized protein
STRING	Solyc01g088820.2.1	1e-136	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8028	23	27