PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_13088_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | GATA | ||||||||
Protein Properties | Length: 150aa MW: 15845.3 Da PI: 10.671 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 57.4 | 2e-18 | 31 | 65 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs C+tt TplWR gp g+k+LCnaCG++y kk++ cra_locus_13088_iso_3_len_1051_ver_3 31 CSDCHTTRTPLWRGGPAGPKSLCNACGIKYNKKRR 65 ********************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.1E-13 | 25 | 83 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.532 | 25 | 60 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.05E-12 | 26 | 64 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.2E-15 | 30 | 65 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 3.0E-16 | 31 | 65 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 3.89E-11 | 31 | 65 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 31 | 56 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MDLKEEKRSE SAPENTKVSS SPSSSKQIKS CSDCHTTRTP LWRGGPAGPK SLCNACGIKY 60 NKKRRELLGL DRGRSENNKG KKKKKSGGGG GGGKSSGSSG GEVAQSLRMK LMALGGEMML 120 RRSGKLLGKL REEEQAAILL MALSCGSVCA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 62 | 84 | KRRELLGLDRGRSENNKGKKKKK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00335 | DAP | Transfer from AT3G06740 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027099199.1 | 4e-63 | GATA transcription factor 16-like | ||||
Refseq | XP_027176929.1 | 4e-63 | GATA transcription factor 16-like | ||||
TrEMBL | A0A068VHS2 | 2e-60 | A0A068VHS2_COFCA; Uncharacterized protein | ||||
STRING | Migut.D00108.1.p | 1e-53 | (Erythranthe guttata) |