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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
cra_locus_1304_iso_4 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family |
Whirly |
Protein Properties |
Length: 283aa MW: 31892 Da PI: 9.709 |
Description |
Whirly family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
cra_locus_1304_iso_4 | genome | MPGR | - |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Whirly | 217.7 | 1.1e-67 | 130 | 268 | 1 | 139 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesc 74
s+yk+kaal+v+++ p+f+ ldsg++kl+++G++ll++a+a+++r+ydW++kq+f+ls+te+++l++l++k+sc
cra_locus_1304_iso_4_len_1303_ver_3 130 SIYKGKAALTVEPRPPEFTPLDSGAFKLSKEGFVLLQFAPAAGVRQYDWSRKQVFSLSVTEMGNLISLGTKDSC 203
7************************************************************************* PP
Whirly 75 effhdpaakgsneGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
effhdp++++s+eG+vrk+lk+ePlpdGsG+f+nlsv+n+lv+ +e++++Pv+kaefavl+s+++
cra_locus_1304_iso_4_len_1303_ver_3 204 EFFHDPFKGKSDEGRVRKVLKIEPLPDGSGHFFNLSVQNKLVNLDENIYIPVTKAEFAVLNSAFN 268
*************************************************************9996 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006281 | Biological Process | DNA repair |
GO:0032211 | Biological Process | negative regulation of telomere maintenance via telomerase |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0045910 | Biological Process | negative regulation of DNA recombination |
GO:0009508 | Cellular Component | plastid chromosome |
GO:0009570 | Cellular Component | chloroplast stroma |
GO:0003697 | Molecular Function | single-stranded DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0003723 | Molecular Function | RNA binding |
GO:0042162 | Molecular Function | telomeric DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 283 aa
Download sequence Send
to blast |
XAGGKHSKVY TEEKLLATTR QLIIPENFLK MLNLSLASSS MGRLTIQNPN KQDLHQFHFQ 60 LFPTFLFDTT NKSSSLSFSN KSYKSLSLKC RHSDYFEAQP QQQQQRFSPN DSSFSSQQGT 120 SPPRVFVGYS IYKGKAALTV EPRPPEFTPL DSGAFKLSKE GFVLLQFAPA AGVRQYDWSR 180 KQVFSLSVTE MGNLISLGTK DSCEFFHDPF KGKSDEGRVR KVLKIEPLPD GSGHFFNLSV 240 QNKLVNLDEN IYIPVTKAEF AVLNSAFNYV LPYLLGWNTF AIP
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1l3a_A | 1e-105 | 91 | 279 | 12 | 192 | p24: plant transcriptional regulator PBF-2 |
1l3a_B | 1e-105 | 91 | 279 | 12 | 192 | p24: plant transcriptional regulator PBF-2 |
1l3a_C | 1e-105 | 91 | 279 | 12 | 192 | p24: plant transcriptional regulator PBF-2 |
1l3a_D | 1e-105 | 91 | 279 | 12 | 192 | p24: plant transcriptional regulator PBF-2 |
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Functional Description ? help
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Source |
Description |
UniProt | Single-stranded DNA-binding protein that acts as a transcriptional activator of the pathogenesis-related gene PR-10a. Upon elicitation, binds a 30bp promoter sequence known as elicitor element response (ERE) and is required for PR-10a expression. {ECO:0000269|PubMed:10948264, ECO:0000269|PubMed:12080340, ECO:0000269|PubMed:14960277}. |