PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_1304_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family Whirly
Protein Properties Length: 223aa    MW: 25309.4 Da    PI: 10.0543
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_1304_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly126.51.5e-39130213184
                               Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesc 74 
                                          s+yk+kaal+v+++ p+f+ ldsg++kl+++G++ll++a+a+++r+ydW++kq+f+ls+te+++l++l++k+sc
  cra_locus_1304_iso_3_len_1739_ver_3 130 SIYKGKAALTVEPRPPEFTPLDSGAFKLSKEGFVLLQFAPAAGVRQYDWSRKQVFSLSVTEMGNLISLGTKDSC 203
                                          7************************************************************************* PP

                               Whirly  75 effhdpaakg 84 
                                          effhdp++++
  cra_locus_1304_iso_3_len_1739_ver_3 204 EFFHDPFKGK 213
                                          *******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.102.4E-44117213IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544472.12E-38123213IPR009044ssDNA-binding transcriptional regulator
PfamPF085363.4E-37131214IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0032211Biological Processnegative regulation of telomere maintenance via telomerase
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045910Biological Processnegative regulation of DNA recombination
GO:0009508Cellular Componentplastid chromosome
GO:0009570Cellular Componentchloroplast stroma
GO:0003697Molecular Functionsingle-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003723Molecular FunctionRNA binding
GO:0042162Molecular Functiontelomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
XAGGKHSKVY TEEKLLATTR QLIIPENFLK MLNLSLASSS MGRLTIQNPN KQDLHQFHFQ  60
LFPTFLFDTT NKSSSLSFSN KSYKSLSLKC RHSDYFEAQP QQQQQRFSPN DSSFSSQQGT  120
SPPRVFVGYS IYKGKAALTV EPRPPEFTPL DSGAFKLSKE GFVLLQFAPA AGVRQYDWSR  180
KQVFSLSVTE MGNLISLGTK DSCEFFHDPF KGKRYDVLHF KFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1l3a_A4e-569121312126p24: plant transcriptional regulator PBF-2
1l3a_B4e-569121312126p24: plant transcriptional regulator PBF-2
1l3a_C4e-569121312126p24: plant transcriptional regulator PBF-2
1l3a_D4e-569121312126p24: plant transcriptional regulator PBF-2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that acts as a transcriptional activator of the pathogenesis-related gene PR-10a. Upon elicitation, binds a 30bp promoter sequence known as elicitor element response (ERE) and is required for PR-10a expression. {ECO:0000269|PubMed:10948264, ECO:0000269|PubMed:12080340, ECO:0000269|PubMed:14960277}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027095447.12e-75single-stranded DNA-binding protein WHY1, chloroplastic-like
SwissprotQ9LL851e-62WHY1_SOLTU; Single-stranded DNA-binding protein WHY1, chloroplastic
TrEMBLA0A068TVJ04e-74A0A068TVJ0_COFCA; Uncharacterized protein
STRINGXP_009599234.18e-68(Nicotiana tomentosiformis)