PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | cra_locus_1304_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
||||||||
Family | Whirly | ||||||||
Protein Properties | Length: 189aa MW: 21078.4 Da PI: 9.2386 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 219.3 | 3.4e-68 | 36 | 174 | 1 | 139 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesc 74 s+yk+kaal+v+++ p+f+ ldsg++kl+++G++ll++a+a+++r+ydW++kq+f+ls+te+++l++l++k+sc cra_locus_1304_iso_1_len_1023_ver_3 36 SIYKGKAALTVEPRPPEFTPLDSGAFKLSKEGFVLLQFAPAAGVRQYDWSRKQVFSLSVTEMGNLISLGTKDSC 109 7************************************************************************* PP Whirly 75 effhdpaakgsneGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 effhdp++++s+eG+vrk+lk+ePlpdGsG+f+nlsv+n+lv+ +e++++Pv+kaefavl+s+++ cra_locus_1304_iso_1_len_1023_ver_3 110 EFFHDPFKGKSDEGRVRKVLKIEPLPDGSGHFFNLSVQNKLVNLDENIYIPVTKAEFAVLNSAFN 174 *************************************************************9996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 1.5E-78 | 25 | 187 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 6.51E-74 | 29 | 187 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 2.9E-63 | 37 | 171 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0032211 | Biological Process | negative regulation of telomere maintenance via telomerase | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0045910 | Biological Process | negative regulation of DNA recombination | ||||
GO:0009508 | Cellular Component | plastid chromosome | ||||
GO:0009570 | Cellular Component | chloroplast stroma | ||||
GO:0003697 | Molecular Function | single-stranded DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0042162 | Molecular Function | telomeric DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 189 aa Download sequence Send to blast |
MLDWIVSLYG KFKTLLLYGI LGVTGTSPPR VFVGYSIYKG KAALTVEPRP PEFTPLDSGA 60 FKLSKEGFVL LQFAPAAGVR QYDWSRKQVF SLSVTEMGNL ISLGTKDSCE FFHDPFKGKS 120 DEGRVRKVLK IEPLPDGSGH FFNLSVQNKL VNLDENIYIP VTKAEFAVLN SAFNYVLPYL 180 LGWNTFAIP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1l3a_A | 1e-104 | 25 | 185 | 32 | 192 | p24: plant transcriptional regulator PBF-2 |
1l3a_B | 1e-104 | 25 | 185 | 32 | 192 | p24: plant transcriptional regulator PBF-2 |
1l3a_C | 1e-104 | 25 | 185 | 32 | 192 | p24: plant transcriptional regulator PBF-2 |
1l3a_D | 1e-104 | 25 | 185 | 32 | 192 | p24: plant transcriptional regulator PBF-2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that acts as a transcriptional activator of the pathogenesis-related gene PR-10a. Upon elicitation, binds a 30bp promoter sequence known as elicitor element response (ERE) and is required for PR-10a expression. {ECO:0000269|PubMed:10948264, ECO:0000269|PubMed:12080340, ECO:0000269|PubMed:14960277}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011087065.2 | 1e-104 | single-stranded DNA-binding protein WHY1, chloroplastic | ||||
Refseq | XP_024994382.1 | 1e-104 | single-stranded DNA-binding protein WHY1, chloroplastic-like | ||||
Swissprot | Q9LL85 | 1e-103 | WHY1_SOLTU; Single-stranded DNA-binding protein WHY1, chloroplastic | ||||
TrEMBL | A0A068TVJ0 | 1e-102 | A0A068TVJ0_COFCA; Uncharacterized protein | ||||
STRING | Solyc05g007100.2.1 | 1e-102 | (Solanum lycopersicum) |