PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_13047_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NAC

Protein Properties

Length: 300aa MW: 34297.4 Da PI: 6.3703

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_13047_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	153.1	1.3e-47	11	138	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrkn 75 pGfrFhPt+eel+++yLk+ ++gkkl++ ++i ++iy+++Pw+Lp +k +e+ewyfF++rd+k+ +g r+n cra_locus_13047_iso_2_len_956_ver_3 11 LPGFRFHPTEEELLQFYLKNMLQGKKLHF-DIIGFLNIYHHDPWELPGLAKIGEREWYFFVPRDRKQGSGGRPN 83 59***********************99.99***********8888899**************** PP NAM 76 ratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 r+tk+g+Wkatg+d+++l+ ++ +glkktLvfykgrap+g ktdW+m+eyrl cra_locus_13047_iso_2_len_956_ver_3 84 RTTKAGFWKATGSDRRILCIsnPKNMIGLKKTLVFYKGRAPRGCKTDWIMNEYRL 138 *************987556778*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	53.391	10	156	IPR003441	NAC domain
SuperFamily	SSF101941	1.44E-55	11	156	IPR003441	NAC domain
Pfam	PF02365	5.7E-25	12	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009965	Biological Process	leaf morphogenesis
GO:0010200	Biological Process	response to chitin
GO:0045792	Biological Process	negative regulation of cell size
GO:0048281	Biological Process	inflorescence morphogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
XDDSCAADLQ LPGFRFHPTE EELLQFYLKN MLQGKKLHFD IIGFLNIYHH DPWELPGLAK 60 IGEREWYFFV PRDRKQGSGG RPNRTTKAGF WKATGSDRRI LCISNPKNMI GLKKTLVFYK 120 GRAPRGCKTD WIMNEYRLPD TSPVSQEAVL CKVYRKATSL RVLEQRAAME EEANTFNADT 180 ATTTTTFTSS SSPPPMDTIS TWSPIDDFAL TSNNHAFLKK EAEELLGLDN EISDIRSENY 240 KDNNNNNTSN NLGLEKGKTN LTELQVPIFN MDWTQDPLWT QLRSPWLDIL TPGYANILNF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-45	12	159	19	168	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-45	12	159	19	168	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-45	12	159	19	168	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-45	12	159	19	168	NO APICAL MERISTEM PROTEIN
3swm_A	9e-45	12	159	22	171	NAC domain-containing protein 19
3swm_B	9e-45	12	159	22	171	NAC domain-containing protein 19
3swm_C	9e-45	12	159	22	171	NAC domain-containing protein 19
3swm_D	9e-45	12	159	22	171	NAC domain-containing protein 19
3swp_A	9e-45	12	159	22	171	NAC domain-containing protein 19
3swp_B	9e-45	12	159	22	171	NAC domain-containing protein 19
3swp_C	9e-45	12	159	22	171	NAC domain-containing protein 19
3swp_D	9e-45	12	159	22	171	NAC domain-containing protein 19
4dul_A	8e-45	12	159	19	168	NAC domain-containing protein 19
4dul_B	8e-45	12	159	19	168	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028061344.1	1e-129	NAC domain-containing protein 22-like
Swissprot	Q10S65	8e-95	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A2R6QI17	1e-126	A0A2R6QI17_ACTCH; NAC domain-containing protein
STRING	XP_008382468.1	1e-117	(Malus domestica)

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]