PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_13042_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GRAS
Protein Properties Length: 574aa    MW: 65295.1 Da    PI: 4.4743
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_13042_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS138.28.7e-431945541373
                                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn 73 
                                           l++lL +  ea ++g+ ela+ l++r++e  +p g++++R+a+ + +   +   +           s++s   
  cra_locus_13042_iso_1_len_1838_ver_3 194 LQHLLRAYCEAKENGHEELADVLVKRINEKINPLGNSIERVAFNLFQTTTENQGG---------YLSQQS--- 254
                                           5789999999********************************9866554443333.........344444... PP

                                  GRAS  74 sseelaalklfsevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiT 145
                                            ++  aa+k+f++  P  +f+h+taN+ Ilea+ ++ e v i+Dfd+++G+QW+++++a++        l++T
  cra_locus_13042_iso_1_len_1838_ver_3 255 IKNFEAAFKAFYQWYPHGRFAHFTANSVILEAIPNDaEIVQIVDFDMGEGIQWAPMIEAISMT---GKVLKLT 324
                                           78888999*************************9997888*********************94...579**** PP

                                  GRAS 146 gvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrll 214
                                            ++s++++   + + eet++rL + A+ +g++++ +  + ++l++ e++++++    +E +a n+++ l ++ 
  cra_locus_13042_iso_1_len_1838_ver_3 325 SIKSEDEStsTEWRFEETRRRLCDHARCFGLNLHVEETTIENLSA-EIKRMKMAGefREWVAFNCMVGLPHMG 396
                                           ****88888788899*******************99965555543.35555555566***************9 PP

                                  GRAS 215 desvsleserdevLklvkslsPk......vvvvveqeadhnsesFlerflealeyysalfdsleaklpres.e 280
                                             + +++s++ ++L++ k+ls++      ++ + + e +  +es+   f+ +l +y alf+s+e ++p+   e
  cra_locus_13042_iso_1_len_1838_ver_3 397 --RRQSRSRIMDFLRIAKELSANhgsrrgIIAFGDGEPEA-GESYTSFFSGKLLHYQALFESVECNFPSYLsE 466
                                           ..445555579**********9766666678888888777.7899**********************997559 PP

                                  GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve. 352
                                           +ri +E  +l++ +++    ++ +     et e  +e +  +GF   ++s++   +a+ ++++ +s  y+v+ 
  cra_locus_13042_iso_1_len_1838_ver_3 467 ARIAMESLFLSPYVSSQSWFQQWK-----ETSEGGKETI--VGFDGWRMSKESLIEAQEMVNEKES-CYKVKi 531
                                           ***********9988766666655.....7777777776..8*********************994.499985 PP

                                  GRAS 353 ..eesgslvlgWkdrpLvsvSaW 373
                                             + ++ +vl Wkd pLv vS W
  cra_locus_13042_iso_1_len_1838_ver_3 532 egKGENKMVLEWKDIPLVRVSIW 554
                                           555599***************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098520.001168533IPR005202Transcription factor GRAS
PfamPF035143.0E-40194554IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
XAGGINFEWT KLVYICPMKS PSISTQKLIL LCLPPETATG KMMQSHLQLS WPIDNYGYCG  60
FDTGLYGFAD QNDFSSSFTP EDCSEISFDS YFASTIDPDS LVEFPCFYGE KQAMETMTQS  120
IMEDLEPISS CRLEDTCRWM NESDSDDHLS SQLTSETDLW SPCPVLEQSE TPASNMTLNL  180
PGNNSMELDI QLVLQHLLRA YCEAKENGHE ELADVLVKRI NEKINPLGNS IERVAFNLFQ  240
TTTENQGGYL SQQSIKNFEA AFKAFYQWYP HGRFAHFTAN SVILEAIPND AEIVQIVDFD  300
MGEGIQWAPM IEAISMTGKV LKLTSIKSED ESTSTEWRFE ETRRRLCDHA RCFGLNLHVE  360
ETTIENLSAE IKRMKMAGEF REWVAFNCMV GLPHMGRRQS RSRIMDFLRI AKELSANHGS  420
RRGIIAFGDG EPEAGESYTS FFSGKLLHYQ ALFESVECNF PSYLSEARIA MESLFLSPYV  480
SSQSWFQQWK ETSEGGKETI VGFDGWRMSK ESLIEAQEMV NEKESCYKVK IEGKGENKMV  540
LEWKDIPLVR VSIWVXEADN PTTQQTVNLA RKEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-151935544374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027066203.10.0nodulation-signaling pathway 2 protein-like
RefseqXP_027070545.10.0nodulation-signaling pathway 2 protein-like
RefseqXP_027173087.10.0nodulation-signaling pathway 2 protein-like
TrEMBLA0A068UFN30.0A0A068UFN3_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53611938