PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_12_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family RAV
Protein Properties Length: 362aa    MW: 40167 Da    PI: 9.3053
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_12_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.43.5e-1363111155
                                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                        s++kGV   + +grW A+I++      ++r++lg+f  ++eAa+a++ a+++++g
  cra_locus_12_iso_1_len_1626_ver_3  63 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDIAAQRFRG 111
                                        689***9788.8*********3.....5**********99*************98 PP
2B397.77.6e-31197293193
                                        EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHH CS
                                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkan 72 
                                        f+k  tpsdv+k++rlv+pk++ae+h    +g++ +++ l +ed sg++W+++++y+++s++ vltkGW++Fvk++
  cra_locus_12_iso_1_len_1626_ver_3 197 FEKSVTPSDVGKLNRLVIPKQHAEKHfplqSGNTSKGVLLNFEDMSGKVWRFRYSYWNSSKAXVLTKGWSRFVKEK 272
                                        89****************************88999***************************************** PP

                                        T--TT-EEEEEE-SSSEE..E CS
                                 B3  73 gLkegDfvvFkldgrsefelv 93 
                                        +Lk+gD+v F+++   +++l+
  cra_locus_12_iso_1_len_1626_ver_3 273 NLKAGDIVSFQRSTGIDKQLY 293
                                        ***********7655444455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.05E-1663119IPR016177DNA-binding domain
PfamPF008473.3E-863111IPR001471AP2/ERF domain
CDDcd000181.90E-2563118No hitNo description
Gene3DG3DSA:3.30.730.101.2E-1964119IPR001471AP2/ERF domain
PROSITE profilePS5103219.95464119IPR001471AP2/ERF domain
SMARTSM003802.6E-2964125IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.9E-39190302IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-29195294IPR015300DNA-binding pseudobarrel domain
CDDcd100176.61E-28196285No hitNo description
PfamPF023621.0E-27197296IPR003340B3 DNA binding domain
SMARTSM010191.1E-22197300IPR003340B3 DNA binding domain
PROSITE profilePS5086313.817197300IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009910Biological Processnegative regulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MDAGSCIDET TTSDTISTAP TSLSTLPVAK SPEISLCRVG SGASVILDSE GGVEAESRKL  60
PSSRFKGVVP QPNGRWGAQI YEKHQRVWLG TFNEEDEAAR AYDIAAQRFR GRDAVTNFKP  120
LSEISEEDDI ESAFLKFSSK AEIVDMLRKH TYNDELEQSK RNFGLNGGNF NKGIKDGFSN  180
PNNSGLGKNT EAREQLFEKS VTPSDVGKLN RLVIPKQHAE KHFPLQSGNT SKGVLLNFED  240
MSGKVWRFRY SYWNSSKAXV LTKGWSRFVK EKNLKAGDIV SFQRSTGIDK QLYIDWKPRN  300
TAAAIAAPIQ PVQTVRLFGV NIVSNVVVVD NTNITCSTGK RVREIEFLAF DCSKKPRIID  360
AL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-5619430011118DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00139DAPTransfer from AT1G13260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018823697.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1-like
SwissprotQ9ZWM91e-144RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLW8CWZ40.0W8CWZ4_OLEEU; Tempranillo
STRINGVIT_01s0011g03070.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29582453
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]