PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_12955_iso_5
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bHLH
Protein Properties Length: 564aa    MW: 62266.1 Da    PI: 7.2999
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_12955_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH57.82e-18262311255
                                           HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                   HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                           r +h++ E+rRR++iN++f++Lre++P++    ++K +Ka+ L +++eYI+ Lq
  cra_locus_12955_iso_5_len_2555_ver_3 262 RSKHSATEQRRRSKINDRFQKLREIIPHS----DQKRDKASFLLEVIEYIQFLQ 311
                                           889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.68E-18260320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-22260319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.907260310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.9E-16262311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.69E-15262315No hitNo description
SMARTSM003532.1E-13266316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MELPQPRPFG TEGRKTTHDF LSLYSPAQQD PRPQGGFLKT HDFLQPLQQV GKDVTKEEDK  60
IEIKDVERPP PAAPPPPAVE HILPGGIGTY SITYFNQRIT KPEGNLFMMA QASSTNRTDE  120
NNSNSSSYTG SGFTLWDESA VKKGKTGKEN NVVDRPVPRE SVVNMGGGPW TTSSERPSQS  180
SSNQKNNNTT FSSPSTSQPS PATRNQSFMN MITSAKTLQE EDDDEEEEEE FIVKKEPTSH  240
PKGNLSVKLD VKSNDQKPCT PRSKHSATEQ RRRSKINDRF QKLREIIPHS DQKRDKASFL  300
LEVIEYIQFL QDKVHKFEGY PGWNQEPSKL MPWRNPRTPE DFINQTQPTN ISSGPASSML  360
AAKFEESKTG ASPVLPINGQ HLVESDISTA FREKVQQPEI TNKATSLPLP LRTSIFPFGG  420
VSNTSFPTSS RPPSDTEKPT SQAPQSPFWP SPGAFTSDNA VPDKVKDREI TIESGTINIS  480
SIYSQGLLNS LTQALQTSGI DLSQASISVQ IDLGKRANGR VNSSASIVKD TDNQISNQAM  540
PRFVVTSTGE DSGQAMKRLK TSRS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027123148.10.0transcription factor BIM1-like isoform X1
RefseqXP_027123149.10.0transcription factor BIM1-like isoform X1
TrEMBLA0A068TT570.0A0A068TT57_COFCA; Uncharacterized protein
STRINGSolyc03g114720.2.10.0(Solanum lycopersicum)