PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_12949_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 389aa    MW: 43395 Da    PI: 7.4149
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_12949_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.96e-19213261355
                                   AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                           ++GVr+++ +g+WvAeIr p++   r+r++lg+f+taeeAa a++ a+  l+g
  cra_locus_12949_iso_1_len_1375_ver_3 213 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEEAAFAYDTAAYMLRG 261
                                           8******9.**********955...5**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.83E-31211271No hitNo description
Gene3DG3DSA:3.30.730.103.9E-31212270IPR001471AP2/ERF domain
PROSITE profilePS5103222.418212269IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-22212269IPR016177DNA-binding domain
SMARTSM003801.1E-35212275IPR001471AP2/ERF domain
PfamPF008472.1E-12213261IPR001471AP2/ERF domain
PRINTSPR003671.3E-10213224IPR001471AP2/ERF domain
PRINTSPR003671.3E-10235251IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
XFLGGLIRRE GGGSGGVSRT GSLKLSSPDS TSSLEDITSG SSLNGKFSEY LEKDLVEENY  60
QTHYEHVKEN HIPLNFLESF PSKAHHQVPE PCSSPNSLSK FPNLGLFLQE PSILEISRKA  120
EESLSKNDDN QNPLFPISQS QMGQNQIHPG TNQWLKINQN LTNYSSKGFS DYWLSTTKTQ  180
PMKFTGGRRS SMIQNGNNCQ KGSNFSSSNG KLFRGVRQRH WGKWVAEIRL PRNRTRVWLG  240
TFDTAEEAAF AYDTAAYMLR GDYAHLNFPE LKNQINGNSI SCSTAALLEA KLQALSQGNN  300
NNNISSAAAT KNKADQNSRS LKILNQSSKV GGSDDQMMIN YEKKMKKMED LDHHHHQQGL  360
AEVNDDVQLS RMPSLDMDTI WDALLVPDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-20208269163ATERF1
3gcc_A2e-20208269163ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027118095.11e-127ethylene-responsive transcription factor ERF062
RefseqXP_027165580.11e-127ethylene-responsive transcription factor ERF062
TrEMBLA0A068URR21e-125A0A068URR2_COFCA; Uncharacterized protein
STRINGXP_009589826.11e-108(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA109211825