PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_12943_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

GRF

Protein Properties

Length: 392aa MW: 42399.4 Da PI: 8.7234

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_12943_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.3	1.6e-24	121	165	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+ cra_locus_12943_iso_3_len_1510_ver_3 121 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVES 165 79****************************************985 PP
2	QLQ	64.7	2.3e-22	60	95	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa Q+q+L++Q+++yKyL+a++PvP+eL+++i++ cra_locus_12943_iso_3_len_1510_ver_3 60 PFTAVQWQELEHQAMIYKYLMAGLPVPAELVVPIRR 95 9*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	4.0E-13	59	95	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	9.0E-17	60	94	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	23.754	60	95	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.762	121	165	IPR014977	WRC domain
Pfam	PF08879	4.8E-21	122	164	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence Send to blast
XGKXQKSVEK VVGGGGESKV GEGGGGGMSG TSSTSVVTVA GGGGGVGEVV GGGGCYYRPP 60 FTAVQWQELE HQAMIYKYLM AGLPVPAELV VPIRRSFEAL SSRLFHHTAL SYCSYYGKKF 120 DPEPGRCRRT DGKKWRCSKD AYPDSKYCER HMHRGRNRSR KPVESHSASQ SLSTAMSNIA 180 TGSSSSSGIF RNSGSGSFQH MSVYPVTNSE SLYSGSSATK LQIDPVSYGN DNKDYRYIHG 240 LSTDADVQNF SPEASGSLGM VSNVNSAWRL LPSQVSSNPL LKTKNDAQLL QSSSELQMAQ 300 AFNPMMDTSS MSKQRQQHCF FGSEVGSPGP GKQEQHSMRP FFDEWPTTKE SWSNLDDGRS 360 EKNTFSTTQL SISIPMASSE FSSRGARSSD DA

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence Send to blast

XGKXQKSVEK VVGGGGESKV GEGGGGGMSG TSSTSVVTVA GGGGGVGEVV GGGGCYYRPP  60
FTAVQWQELE HQAMIYKYLM AGLPVPAELV VPIRRSFEAL SSRLFHHTAL SYCSYYGKKF  120
DPEPGRCRRT DGKKWRCSKD AYPDSKYCER HMHRGRNRSR KPVESHSASQ SLSTAMSNIA  180
TGSSSSSGIF RNSGSGSFQH MSVYPVTNSE SLYSGSSATK LQIDPVSYGN DNKDYRYIHG  240
LSTDADVQNF SPEASGSLGM VSNVNSAWRL LPSQVSSNPL LKTKNDAQLL QSSSELQMAQ  300
AFNPMMDTSS MSKQRQQHCF FGSEVGSPGP GKQEQHSMRP FFDEWPTTKE SWSNLDDGRS  360
EKNTFSTTQL SISIPMASSE FSSRGARSSD DA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027182695.1	0.0	growth-regulating factor 4-like isoform X2
TrEMBL	A0A1S4AZ62	1e-178	A0A1S4AZ62_TOBAC; growth-regulating factor 4-like isoform X2
STRING	XP_009605688.1	1e-177	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA743	23	84