PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_12904_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Trihelix

Protein Properties

Length: 491aa MW: 55620.1 Da PI: 5.8777

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_12904_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	65.2	1.4e-20	134	225	1	81
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykk 63 +Wt++ v++Li+++ +++++ + ++ kk++W+ vsk + ++g+++sp+qC++k+++lnkrykk cra_locus_12904_iso_1_len_1992_ver_3 134 KWTDNSVRLLIQVVASVGDDGSLESpdrvrrktgiIKKGKWKTVSKILISKGYHVSPQQCEDKFNDLNKRYKK 206 7************888888854444555666779********************************* PP trihelix 64 ikegekkr.tsessstcpy 81 ++++ +++ +++++++ + cra_locus_12904_iso_1_len_1992_ver_3 207 LNDILGRGmSCKVVENPGL 225 ****9977888877655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.8E-18	132	221	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence Send to blast
MNNSGTGSGF LSGYTGGFLG MNRQPQNPGG FLGLNRNHQQ TTNNPAHTQK ENVQSSMDIE 60 PAPVQRPTAV REVKDSNPRG FTMNFGKEKT FGASNVTINF NDDSTDDEPS YEEGNEEGTS 120 GVKGKKDAPW QRMKWTDNSV RLLIQVVASV GDDGSLESPD RVRRKTGIIK KGKWKTVSKI 180 LISKGYHVSP QQCEDKFNDL NKRYKKLNDI LGRGMSCKVV ENPGLLFGMH HLSEKAKEDV 240 KKLLGSKHLF YREICAYHNG QKIPDCSDLE LPVHPATVAE QIWNHSDVSP AAANCSKDTD 300 ESPVAPGCLK GNNVSEEEDD EETDESEDDQ SDDDTENNAC GSIGKMGEYR DRERMKPVEN 360 IRTQFSQKDN FEAEIAGIFD DPTKSQWERK QWIKKRMLQL QEERIGIQAE AVELEKRRLK 420 WLRFCNKKEL ELEMGKLEKD RLMLENEQKV LQLKQKELEL ESRRPEASFS LTSFSIDIMG 480 GRDHMNSARF H

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence Send to blast

MNNSGTGSGF LSGYTGGFLG MNRQPQNPGG FLGLNRNHQQ TTNNPAHTQK ENVQSSMDIE  60
PAPVQRPTAV REVKDSNPRG FTMNFGKEKT FGASNVTINF NDDSTDDEPS YEEGNEEGTS  120
GVKGKKDAPW QRMKWTDNSV RLLIQVVASV GDDGSLESPD RVRRKTGIIK KGKWKTVSKI  180
LISKGYHVSP QQCEDKFNDL NKRYKKLNDI LGRGMSCKVV ENPGLLFGMH HLSEKAKEDV  240
KKLLGSKHLF YREICAYHNG QKIPDCSDLE LPVHPATVAE QIWNHSDVSP AAANCSKDTD  300
ESPVAPGCLK GNNVSEEEDD EETDESEDDQ SDDDTENNAC GSIGKMGEYR DRERMKPVEN  360
IRTQFSQKDN FEAEIAGIFD DPTKSQWERK QWIKKRMLQL QEERIGIQAE AVELEKRRLK  420
WLRFCNKKEL ELEMGKLEKD RLMLENEQKV LQLKQKELEL ESRRPEASFS LTSFSIDIMG  480
GRDHMNSARF H

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027077760.1	0.0	uncharacterized protein LOC113701348
Refseq	XP_027077771.1	0.0	uncharacterized protein LOC113701348
Refseq	XP_027149685.1	0.0	uncharacterized protein LOC113749986
TrEMBL	A0A068VET5	0.0	A0A068VET5_COFCA; Uncharacterized protein
STRING	XP_009768464.1	1e-156	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12913	17	20