PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_12781_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

FAR1

Protein Properties

Length: 793aa MW: 90653 Da PI: 4.8546

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_12781_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.8	1.5e-22	184	268	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekd 73 ++Yn YAke+GF +r+++s ++++++e + ++C++eg+++ ++ + ++r+etrtgC+a++++++ ++ cra_locus_12781_iso_1_len_2455_ver_3 184 NYYNCYAKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKSMKEAS-----NRRKETRTGCQAMIRLRLIES 251 69**************************************98877.....999************** PP FAR1 74 gkwevtkleleHnHela 90 ++w+v++++l+HnH++ cra_locus_12781_iso_1_len_2455_ver_3 252 SRWRVDEVKLHHNHSFD 268 ************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.0E-20	184	268	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.1E-24	387	473	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.052	674	710	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	7.2E-6	684	707	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.5E-4	685	712	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 793 aa Download sequence Send to blast
XDRGMDGXNK VKKEKRGKIE AARGVTGEMA EDDTFSPAGG SLSLNPDIDI TMEGSSENSD 60 RVLEDESSNH QIDGEEVFVF DSNDLEDDGN KVLEIESGDL GDTAEQLLGI ERNDLENDNE 120 QVINFENNDN ENNSDQMLEF PCIDLENGRE GDTATNDQNV VSEGKGYPPP VVGMEFESYG 180 DAYNYYNCYA KELGFAIRVK SSWTKRNSKE KRGAVLCCNC EGFKSMKEAS NRRKETRTGC 240 QAMIRLRLIE SSRWRVDEVK LHHNHSFDPE RAQNSKSHKK MDSGTKRKLE PPVDVEVQTI 300 KLYCTPVNDA SGNGSSNERE LKNQVDQSAH LKLKKGEAEH IHNFFCRMQL KSPNFFYIMD 360 LNDEGHLRNV FWMDSRARAS YIYFGDVIAI DTTCLSKNYE IPLIEFVGVN HHCQSILLGS 420 GLLADESTET YTWLLRAWLS CMSGRPPQTV VTDRCKALQS AISEVFPRAH HRLYLPLVMQ 480 SIFVRLGETA ESEAFSTTLN KTVYNTQKVD EFEMAWEEMV QHFGIGGHEW IQALFEDRER 540 WVPSYVKDTF FAGISSFEPG ESVSSFFDGY VHSQTTLKEF FDIYEVVLQK KHQKEALDDF 600 ESRNSCLTIK SSCIYELQLS EVYTKEMFLK FQVEAELMSS CLGVTKILVN GPTITYLVTE 660 RDEPLANADS EKNFEVIFDK SGAELRCNCS CFNFKGYLCR HALRILNYNG IDEVPSHYIL 720 SRWRKDFKRL YAPDIGSSNI DISNPIQWFD HLYRRAMQIV EQGMNSQEHY MVAWQAFKES 780 LNKVRLVADK NLT

Sequence ? help Back to Top

Protein Sequence Length: 793 aa Download sequence Send to blast

XDRGMDGXNK VKKEKRGKIE AARGVTGEMA EDDTFSPAGG SLSLNPDIDI TMEGSSENSD  60
RVLEDESSNH QIDGEEVFVF DSNDLEDDGN KVLEIESGDL GDTAEQLLGI ERNDLENDNE  120
QVINFENNDN ENNSDQMLEF PCIDLENGRE GDTATNDQNV VSEGKGYPPP VVGMEFESYG  180
DAYNYYNCYA KELGFAIRVK SSWTKRNSKE KRGAVLCCNC EGFKSMKEAS NRRKETRTGC  240
QAMIRLRLIE SSRWRVDEVK LHHNHSFDPE RAQNSKSHKK MDSGTKRKLE PPVDVEVQTI  300
KLYCTPVNDA SGNGSSNERE LKNQVDQSAH LKLKKGEAEH IHNFFCRMQL KSPNFFYIMD  360
LNDEGHLRNV FWMDSRARAS YIYFGDVIAI DTTCLSKNYE IPLIEFVGVN HHCQSILLGS  420
GLLADESTET YTWLLRAWLS CMSGRPPQTV VTDRCKALQS AISEVFPRAH HRLYLPLVMQ  480
SIFVRLGETA ESEAFSTTLN KTVYNTQKVD EFEMAWEEMV QHFGIGGHEW IQALFEDRER  540
WVPSYVKDTF FAGISSFEPG ESVSSFFDGY VHSQTTLKEF FDIYEVVLQK KHQKEALDDF  600
ESRNSCLTIK SSCIYELQLS EVYTKEMFLK FQVEAELMSS CLGVTKILVN GPTITYLVTE  660
RDEPLANADS EKNFEVIFDK SGAELRCNCS CFNFKGYLCR HALRILNYNG IDEVPSHYIL  720
SRWRKDFKRL YAPDIGSSNI DISNPIQWFD HLYRRAMQIV EQGMNSQEHY MVAWQAFKES  780
LNKVRLVADK NLT

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027121779.1	0.0	protein FAR1-RELATED SEQUENCE 8-like isoform X1
Swissprot	Q9S793	0.0	FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBL	A0A2R6QZL7	0.0	A0A2R6QZL7_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRING	XP_009631083.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1347	19	70

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]