PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_12774_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bHLH | ||||||||
Protein Properties | Length: 157aa MW: 18538.2 Da PI: 10.1001 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23 | 1.4e-07 | 88 | 131 | 3 | 51 |
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYI 51 +h ++Er RR++ ++++ eL llP+ +s K+s i+++A + I cra_locus_12774_iso_1_len_738_ver_3 88 HKHMINERMRREKEKQSYIELHNLLPTgT---KSDKNS---IVQMARKTI 131 57999**********************44...555555...555555444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 9.42E-10 | 79 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.56E-6 | 83 | 127 | No hit | No description |
PROSITE profile | PS50888 | 11.534 | 85 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.6E-5 | 88 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.6E-5 | 89 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
XREPNKNRGE IRAMELYFSE FVDYGVEEQL PWFDVALGVN QSAFVKFKDQ PRKAFPLNNQ 60 NLNKKMVDFL KKSWIGSVGV ETEKERNHKH MINERMRREK EKQSYIELHN LLPTGTKSDK 120 NSIVQMARKT IEXXXXXXXX XXXXXXXXXX XXXXXNA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 85 | 97 | RNHKHMINERMRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016462348.1 | 6e-31 | PREDICTED: transcription factor bHLH92-like | ||||
TrEMBL | A0A1S3ZD67 | 1e-29 | A0A1S3ZD67_TOBAC; transcription factor bHLH92-like | ||||
STRING | XP_009614938.1 | 9e-30 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12463 | 18 | 21 |