PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_12601_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 181aa    MW: 20248.8 Da    PI: 6.2905
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_12601_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.62.3e-211466156
                                   AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                                          ++y+G+r+++ +g+++AeIrdps ng  +r +lg+f+taeeAa+a+++a+ +l+g+
  cra_locus_12601_iso_2_len_1278_ver_3 14 PRYRGIRRRP-WGKYAAEIRDPSRNG--ARLWLGTFDTAEEAARAYDRAAYALRGH 66
                                          68********.**********98887..**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.8E-151466IPR001471AP2/ERF domain
CDDcd000186.94E-191475No hitNo description
SuperFamilySSF541716.15E-241574IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.8E-321574IPR001471AP2/ERF domain
SMARTSM003801.1E-341579IPR001471AP2/ERF domain
PROSITE profilePS5103225.0671573IPR001471AP2/ERF domain
PRINTSPR003671.4E-111627IPR001471AP2/ERF domain
PRINTSPR003671.4E-113955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MDNNNNEEQG RKEPRYRGIR RRPWGKYAAE IRDPSRNGAR LWLGTFDTAE EAARAYDRAA  60
YALRGHQAIL NFPNDGEYRN PSPVGGGGAA IHSFNYSGGA RAGTSSSSSS SSSVIRRSSD  120
IYNSSVAENR SSVGQEGEEE EEKVIELEYL DDKVLEDLLG SQTQRQQQQQ QQQDNKRPKH  180
I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-291075974Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009610278.13e-52PREDICTED: ethylene-responsive transcription factor ERF098-like
RefseqXP_016485379.13e-52PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC57e-37ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A1S4B9258e-51A0A1S4B925_TOBAC; ethylene-responsive transcription factor ERF098-like
STRINGXP_009610278.11e-51(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]