PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_12556_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB | ||||||||
Protein Properties | Length: 245aa MW: 26805.9 Da PI: 5.4051 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.2 | 1.9e-18 | 11 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+++Ed l+++v+++G+++W++I+ ++ gR++k+c++rw + cra_locus_12556_iso_1_len_983_ver_3 11 KGSWSPQEDATLIKLVEEHGPRNWSLISTGIP-GRSGKSCRLRWCNQ 56 799*****************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 57.8 | 2.5e-18 | 65 | 107 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +++++Ede++++a+ +G++ W+tIar ++ gRt++ +k++w++ cra_locus_12556_iso_1_len_983_ver_3 65 PFSEQEDEIIIQAHSVHGNR-WATIARLLP-GRTDNAIKNHWNST 107 89******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.487 | 6 | 57 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.12E-30 | 9 | 104 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.8E-16 | 10 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-18 | 11 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-25 | 12 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.52E-15 | 13 | 55 | No hit | No description |
PROSITE profile | PS51294 | 26.6 | 58 | 112 | IPR017930 | Myb domain |
SMART | SM00717 | 4.0E-16 | 62 | 110 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.6E-24 | 65 | 111 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.1E-15 | 65 | 107 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.53E-13 | 65 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MEAASSGERI KGSWSPQEDA TLIKLVEEHG PRNWSLISTG IPGRSGKSCR LRWCNQLSPS 60 VQHRPFSEQE DEIIIQAHSV HGNRWATIAR LLPGRTDNAI KNHWNSTLKR KRQIDSEFPV 120 SSAAAKRQCL EESVAAGSSQ EQSSSGGDDF EEMGLGLIDG PETCLSLLPP GGGTLVESLL 180 MSDDQRKGGS EKEEQRSTAE IEENCLVTIM QRMIAHEVRS YIDKIRSQGG LQIGPGFQSE 240 GLNGP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-40 | 8 | 111 | 1 | 104 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009785340.1 | 1e-100 | PREDICTED: myb protein-like | ||||
Refseq | XP_016515570.1 | 1e-100 | PREDICTED: transcription factor MYB44-like | ||||
TrEMBL | A0A1S4DQ72 | 2e-98 | A0A1S4DQ72_TOBAC; transcription factor MYB44-like | ||||
TrEMBL | A0A1U7XFV8 | 2e-98 | A0A1U7XFV8_NICSY; myb protein-like | ||||
STRING | XP_009785340.1 | 3e-99 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12883 | 16 | 20 |